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(两栖纲,有尾目,隐鳃鲵科)的线粒体全基因组信息及其系统发育意义

The complete mitochondrial genome information of (Amphibia, Caudata, Hynobiidae) and the phylogenetic implication.

作者信息

Suk Ho Young, Kim Dong-Young, Cha Sunho, Min Mi-Sook

机构信息

Department of Life Sciences, Yeungnam University, Gyeongsan, Gyeongsangbuk-do, South Korea.

GenoTech Corporation, Daejeon, South Korea.

出版信息

Mitochondrial DNA B Resour. 2019 Oct 21;4(2):3705-3706. doi: 10.1080/23802359.2019.1679680.

DOI:10.1080/23802359.2019.1679680
PMID:33366152
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7707430/
Abstract

is a hynobiid salamander species found only in a limited area at the southernmost part of the Korean Peninsula. Here, we characterized the complete mitochondrial genome of this species that was used to identify the phylogenetic relationship with other species. The whole sequence was 16,411 bp and included 13 protein-coding genes, 2 ribosomal RNA genes, and 22 transfer RNA genes. The gene arrangement was completely identical to those observed in other species. Upon robust phylogenetic tree reconstructed based on 13 protein-coding genes, species living on the Korean Peninsula showed close phylogenetic affinity; and formed a cluster that was the sister to the cluster of and .

摘要

是一种仅在朝鲜半岛最南端的有限区域发现的隐鳃鲵科蝾螈物种。在此,我们对该物种的完整线粒体基因组进行了特征分析,该基因组用于确定其与其他物种的系统发育关系。整个序列为16411 bp,包括13个蛋白质编码基因、2个核糖体RNA基因和22个转运RNA基因。基因排列与在其他物种中观察到的完全相同。基于13个蛋白质编码基因重建的稳健系统发育树显示,生活在朝鲜半岛的物种表现出密切的系统发育亲缘关系;[物种名称1]和[物种名称2]形成一个聚类,是[物种名称3]和[物种名称4]聚类的姐妹群。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1624/7707430/7f029561e46e/TMDN_A_1679680_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1624/7707430/7f029561e46e/TMDN_A_1679680_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1624/7707430/7f029561e46e/TMDN_A_1679680_F0001_B.jpg

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本文引用的文献

1
A new species of salamander of the genus Hynobius (Amphibia, Caudata, Hynobiidae) from South Korea.来自韩国的隐鳃鲵属(两栖纲,有尾目,隐鳃鲵科)一种新的蝾螈物种。
Zootaxa. 2016 Sep 21;4169(3):475-503. doi: 10.11646/zootaxa.4169.3.4.
2
MITOS: improved de novo metazoan mitochondrial genome annotation.MITOS:改进的从头后生动物线粒体基因组注释。
Mol Phylogenet Evol. 2013 Nov;69(2):313-9. doi: 10.1016/j.ympev.2012.08.023. Epub 2012 Sep 7.
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jModelTest 2: more models, new heuristics and parallel computing.jModelTest 2:更多模型、新启发式方法与并行计算。
Nat Methods. 2012 Jul 30;9(8):772. doi: 10.1038/nmeth.2109.
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MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space.MrBayes 3.2:在大型模型空间中进行高效的贝叶斯系统发育推断和模型选择。
Syst Biol. 2012 May;61(3):539-42. doi: 10.1093/sysbio/sys029. Epub 2012 Feb 22.
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Mitochondrial DNA data unveil highly divergent populations within the genus Hynobius (Caudata: Hynobiidae) in South Korea.线粒体 DNA 数据揭示了韩国蚓螈属(有尾目:蚓螈科)内高度分化的种群。
Mol Cells. 2011 Feb;31(2):105-12. doi: 10.1007/s10059-011-0014-x. Epub 2011 Jan 6.
6
Genetic relationships among salamanders of the genus Hynobius (Amphibia, Caudata) from Korea and southwestern Japan.
Zoolog Sci. 2007 Nov;24(11):1128-33. doi: 10.2108/zsj.24.1128.
7
Phylogeny, evolution, and biogeography of Asiatic Salamanders (Hynobiidae).亚洲蝾螈(隐鳃鲵科)的系统发育、进化与生物地理学
Proc Natl Acad Sci U S A. 2006 May 9;103(19):7360-5. doi: 10.1073/pnas.0602325103. Epub 2006 Apr 28.