一种生产可食用种子油的经济灌木的完整叶绿体基因组。
The complete chloroplast genome of , an economic shrub producing edible seed oil.
作者信息
Lyu Tao, Wang Yupeng, Hu Zhikang, Li Xinlei, Li Jiyuan, Fan Zhengqi, Ye Ning, Yin Hengfu
机构信息
State Key Laboratory of Tree Genetics and Breeding, Research Institute of Subtropical, Forestry, Chinese Academy of Forestry, Hangzhou, China.
Key Laboratory of Forest Genetics and Breeding, Research Institute of Subtropical, Forestry, Chinese Academy of Forestry, Hangzhou, China.
出版信息
Mitochondrial DNA B Resour. 2019 Oct 24;4(2):3736-3737. doi: 10.1080/23802359.2019.1681305.
is an economic woody plant producing high-value edible oils, which is commonly found and cultivated in south areas of China. To provide genetic information for future genetic research, we have sequenced and assembled the complete chloroplast (cp) genome of based on the Illumina Hiseq platform. The total genome size is 161,958 bp in length with 37% GC, which contains a large single copy (LSC, 86,657 bp) region, a small single copy (SSC, 13,347 bp) region, and a pair of inverted repeat (IRs, 30,977 bp) regions. It is comprised of 81 protein-coding genes, 44 transfer RNAs and 4 ribosomal RNAs. To obtain the phylogeny relationship, the cp genome of has been compared with other species; the results indicate that is closely related to . This study provides fundamental information of cp genome, and it is valuable to the molecular phylogenetic and genetic diversity analyses in future.
是一种生产高价值食用油的经济木本植物，在中国南方地区常见且被广泛种植。为了为未来的遗传研究提供遗传信息，我们基于Illumina Hiseq平台对其完整叶绿体（cp）基因组进行了测序和组装。基因组全长161,958 bp，GC含量为37%，包含一个大单拷贝（LSC，86,657 bp）区域、一个小单拷贝（SSC，13,347 bp）区域和一对反向重复（IRs，30,977 bp）区域。它由81个蛋白质编码基因、44个转运RNA和4个核糖体RNA组成。为了获得系统发育关系，已将该植物的cp基因组与其他物种进行了比较；结果表明该植物与关系密切。本研究提供了该植物cp基因组的基础信息，对未来的分子系统发育和遗传多样性分析具有重要价值。
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