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中国南方优良的木本食用油料及园林景观树种木荷(山茶科)的完整叶绿体基因组。

The complete chloroplast genome of Chi. (Theaceae), an excellent woody edible oil and landscaping species in South China.

作者信息

Dong Le, Yin Xin, Huang Bin, Li Tian, Huang Jian Jian, Wen Qiang

机构信息

Jiangxi Provincial Key Laboratory of Camellia Germplasm Conservation and Utilization, Jiangxi Academy of Forestry, Nanchang, China.

Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing, China.

出版信息

Mitochondrial DNA B Resour. 2021 Sep 22;6(10):3013-3015. doi: 10.1080/23802359.2021.1976690. eCollection 2021.

Abstract

is a woody plant that produces excellent edible oil and is a common landscaping species in South China. The complete chloroplast genome of was sequenced, assembled, annotated, and characterized using the Illumina MiSeq platform in this study. The chloroplast genome is 156,968 bp (37.32% GC) and contains a large single copy (LSC) region (86,634 bp), a small single copy (SSC) region (18,272 bp), and a pair of inverted repeat (IR) regions (26,031 bp). It encodes a total of 117 genes, including 81 protein-coding genes, four ribosomal RNA genes, and 32 transfer RNA genes. The phylogenetic tree fully resolved in a clade with , , and . This study contributes to bioinformatics and further phylogeny and conservation studies as well as provides a theoretical basis for the molecular identification of .

摘要

是一种能产出优质食用油的木本植物,也是中国南方常见的园林景观树种。本研究利用Illumina MiSeq平台对其完整叶绿体基因组进行了测序、组装、注释和特征分析。叶绿体基因组为156,968 bp(GC含量37.32%),包含一个大单拷贝(LSC)区域(86,634 bp)、一个小单拷贝(SSC)区域(18,272 bp)和一对反向重复(IR)区域(26,031 bp)。它总共编码117个基因,包括81个蛋白质编码基因、4个核糖体RNA基因和32个转运RNA基因。系统发育树将其与、和完全解析在一个分支中。本研究有助于生物信息学以及进一步的系统发育和保护研究,也为的分子鉴定提供了理论依据。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3af8/8462872/4d87f7bdd545/TMDN_A_1976690_F0001_B.jpg

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