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(山茶科)一种花朵艳丽且种子油丰富的灌木的完整叶绿体基因组。

Complete chloroplast genome of (Theaceae), a shrub with gorgeous flowers and rich seed oil.

作者信息

Yin Xin, Li Tian, Huang Bin, Xu Lian, Wen Qiang

机构信息

Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing, China.

Jiangxi Provincial Key Laboratory of Camellia Germplasm Conservation and Utilization, Jiangxi Academy of Forestry, Nanchang, China.

出版信息

Mitochondrial DNA B Resour. 2021 Mar 15;6(3):840-841. doi: 10.1080/23802359.2021.1884026.

DOI:10.1080/23802359.2021.1884026
PMID:33796649
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7971316/
Abstract

Hu is an oil-tea species with high economic and nutritional value in the south of China. In this study, the chloroplast genome of was determined by Illumina Miseq platform. The whole chloroplast genome is 156,971 bp in length, containing a large single-copy region (LSC, 86,673 bp), a small single-copy region (SSC, 18,394 bp), and a pair of inverted repeat regions (IRa and IRb, 25,952 bp). There is a total of 113 genes in the complete chloroplast genome of which 19 genes are repeated in the IR regions. In addition, the phylogenetic tree revealed a close relationship between and . The complete chloroplast genome will contribute to further studies on phylogeny and conservation of and related taxa in of Theaceae.

摘要

油茶是中国南方一种具有很高经济和营养价值的油茶物种。在本研究中,通过Illumina Miseq平台测定了油茶的叶绿体基因组。整个叶绿体基因组长度为156,971bp,包含一个大单拷贝区域(LSC,86,673bp)、一个小单拷贝区域(SSC,18,394bp)和一对反向重复区域(IRa和IRb,25,952bp)。完整叶绿体基因组中共有113个基因,其中19个基因在IR区域重复。此外,系统发育树显示油茶与另一种植物之间存在密切关系。完整的叶绿体基因组将有助于对山茶科油茶属及其相关类群的系统发育和保护进行进一步研究。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8d66/7971316/34ace61dd446/TMDN_A_1884026_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8d66/7971316/34ace61dd446/TMDN_A_1884026_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8d66/7971316/34ace61dd446/TMDN_A_1884026_F0001_C.jpg

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MAFFT multiple sequence alignment software version 7: improvements in performance and usability.MAFFT 多序列比对软件版本 7:性能和易用性的改进。
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Automatic annotation of organellar genomes with DOGMA.
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Bioinformatics. 2004 Nov 22;20(17):3252-5. doi: 10.1093/bioinformatics/bth352. Epub 2004 Jun 4.