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豆科 Bunge 属植物的完整叶绿体基因组序列。

The complete chloroplast genome sequence of Bunge (Fabaceae).

作者信息

Su Chun, Liu Pei-Liang, Chang Zhao-Yang, Wen Jun

机构信息

College of Life Sciences, Northwest A&F University, Yangling, Shaanxi, People's Republic of China.

Department of Botany, National Museum of Natural History, Smithsonian Institution, Washington, DC, USA.

出版信息

Mitochondrial DNA B Resour. 2019 Oct 24;4(2):3762-3763. doi: 10.1080/23802359.2019.1682479.

DOI:10.1080/23802359.2019.1682479
PMID:33366179
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7707422/
Abstract

The first complete chloroplast genome of Bunge is reported and characterized in this study. The whole chloroplast genome was 122,461 base pairs in length with 110 genes, including 76 protein-coding genes, 30 tRNAs, and 4 rRNAs. In addition, the intron was absent. Maximum-likelihood (ML) phylogenetic analysis indicated that and species of were closely related, which is congruent with previous studies.

摘要

本研究报道并表征了邦吉的首个完整叶绿体基因组。整个叶绿体基因组长度为122,461个碱基对，有110个基因，包括76个蛋白质编码基因、30个tRNA和4个rRNA。此外，不存在内含子。最大似然（ML）系统发育分析表明，[此处原文缺失相关物种名称]与[此处原文缺失相关物种名称]的物种密切相关，这与先前的研究一致。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cd5a/7707422/13ec8c081bf7/TMDN_A_1682479_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cd5a/7707422/13ec8c081bf7/TMDN_A_1682479_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cd5a/7707422/13ec8c081bf7/TMDN_A_1682479_F0001_C.jpg

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本文引用的文献

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PGA: a software package for rapid, accurate, and flexible batch annotation of plastomes.PGA：一个用于叶绿体基因组快速、准确且灵活批量注释的软件包。
Plant Methods. 2019 May 21;15:50. doi: 10.1186/s13007-019-0435-7. eCollection 2019.
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NOVOPlasty: de novo assembly of organelle genomes from whole genome data.NOVOPlasty：从头组装细胞器基因组的全基因组数据。
Nucleic Acids Res. 2017 Feb 28;45(4):e18. doi: 10.1093/nar/gkw955.
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IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies.IQ-TREE：一种用于估计最大似然系统发育树的快速且有效的随机算法。
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Mitochondrial DNA B Resour. 2025 Jun 17;10(7):584-589. doi: 10.1080/23802359.2025.2519213. eCollection 2025.
4
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Mitochondrial DNA B Resour. 2024 May 17;9(5):641-646. doi: 10.1080/23802359.2024.2350626. eCollection 2024.
5
First comparative analysis of complete chloroplast genomes among six (Fabaceae) species.豆科六个物种完整叶绿体基因组的首次比较分析。
Front Plant Sci. 2023 Aug 18;14:1211247. doi: 10.3389/fpls.2023.1211247. eCollection 2023.
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Trimmomatic: a flexible trimmer for Illumina sequence data.Trimmomatic：一款适用于 Illumina 测序数据的灵活修剪工具。
Bioinformatics. 2014 Aug 1;30(15):2114-20. doi: 10.1093/bioinformatics/btu170. Epub 2014 Apr 1.
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MAFFT multiple sequence alignment software version 7: improvements in performance and usability.MAFFT 多序列比对软件版本 7：性能和易用性的改进。
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A phylogeny of legumes (Leguminosae) based on analysis of the plastid matK gene resolves many well-supported subclades within the family.基于质体 matK 基因分析的豆科（豆科）系统发育解决了该科内许多支持良好的亚科。
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