• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

(兰科,指甲兰亚族)的完整质体基因组。

The complete plastid genome of (Orchidaceae, Aeridinae).

作者信息

Ye Bao-Jian, Zhang Sai, Tu Xiong-De, Liu Ding-Kun, Li Ming-He

机构信息

Fujian Colleges and Universities Engineering Research Institute of Conservation and Utilization of Natural Bioresources, College of Forestry, Fujian Agriculture and Forestry University, Fuzhou, China.

Key Laboratory of National Forestry and Grassland Administration for Orchid Conservation and Utilization at College of Landscape Architecture, Fujian Agriculture and Forestry University, Fuzhou, China.

出版信息

Mitochondrial DNA B Resour. 2020 Jan 21;5(1):384-385. doi: 10.1080/23802359.2019.1703594.

DOI:10.1080/23802359.2019.1703594
PMID:33366567
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7748503/
Abstract

The complete plastid genome of was determined and analyzed in this work. The plastome was 149,689 bp in length with 86,778 bp of the large single-copy (LSC) region, 12,129 bp of the small single-copy (SSC) region and 25,391 bp of the inverted repeat (IR) regions. The genome contained 120 genes, 74 protein-coding genes, 38 tRNA genes, and 8 rRNA genes. Phylogenetic analysis of 17 Aeridinae plastomes suggested four groups were divided, and was sister to .

摘要

在本研究中测定并分析了[物种名称]的完整质体基因组。该质体基因组长度为149,689 bp,其中大单拷贝(LSC)区域为86,778 bp,小单拷贝(SSC)区域为12,129 bp,反向重复(IR)区域为25,391 bp。该基因组包含120个基因,74个蛋白质编码基因,38个tRNA基因和8个rRNA基因。对17个指甲兰亚族质体基因组的系统发育分析表明,它们分为四组,且[物种名称1]与[物种名称2]互为姐妹关系。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b39a/7748503/4acf0dd42e6f/TMDN_A_1703594_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b39a/7748503/4acf0dd42e6f/TMDN_A_1703594_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b39a/7748503/4acf0dd42e6f/TMDN_A_1703594_F0001_B.jpg

相似文献

1
The complete plastid genome of (Orchidaceae, Aeridinae).(兰科,指甲兰亚族)的完整质体基因组。
Mitochondrial DNA B Resour. 2020 Jan 21;5(1):384-385. doi: 10.1080/23802359.2019.1703594.
2
The complete plastid genome of (Orchidaceae, Aeridinae).(兰科,指甲兰亚族)的完整质体基因组。
Mitochondrial DNA B Resour. 2021 Mar 26;6(3):1245-1246. doi: 10.1080/23802359.2021.1906171.
3
Complete plastid genome of (Orchidaceae, Aeridinae) and phylogenetic analysis.(兰科,指甲兰亚族)的完整质体基因组及系统发育分析
Mitochondrial DNA B Resour. 2019 Dec 18;5(1):281-282. doi: 10.1080/23802359.2019.1700838.
4
The complete plastid genome of (Orchidaceae, Vandeae).(兰科,万代兰族)的完整质体基因组。
Mitochondrial DNA B Resour. 2020 Jan 21;5(1):390-391. doi: 10.1080/23802359.2019.1704185.
5
The complete plastid genome of (Orchidaceae, Aeridinae).(兰科,指甲兰亚族)的完整质体基因组。
Mitochondrial DNA B Resour. 2019 Nov 12;4(2):3985-3986. doi: 10.1080/23802359.2019.1688702.
6
The complete chloroplast genome sequence of (Orchidaceae, Aeridinae).(兰科,指甲兰亚族)的完整叶绿体基因组序列。
Mitochondrial DNA B Resour. 2021 Sep 24;6(10):3036-3037. doi: 10.1080/23802359.2021.1959459. eCollection 2021.
7
Complete plastid genome of (Orchidaceae, Aeridinae).(兰科,指甲兰亚族)的完整质体基因组。
Mitochondrial DNA B Resour. 2019 Oct 21;4(2):3687-3688. doi: 10.1080/23802359.2019.1679049.
8
Plastome evolution and phylogeny of subtribe Aeridinae (Vandeae, Orchidaceae).质体基因组进化与万代兰亚族(兰科,树兰族)系统发育。
Mol Phylogenet Evol. 2020 Mar;144:106721. doi: 10.1016/j.ympev.2019.106721. Epub 2019 Dec 21.
9
Comparative and phylogenetic analysis of Chiloschista (Orchidaceae) species and DNA barcoding investigation based on plastid genomes.基于叶绿体基因组的 Chiloschista(兰科)物种比较和系统发育分析及 DNA 条形码研究。
BMC Genomics. 2023 Dec 6;24(1):749. doi: 10.1186/s12864-023-09847-8.
10
The complete plastome of (Orchidaceae: Dendrobiinae).(兰科:石斛亚族)的完整质体基因组。
Mitochondrial DNA B Resour. 2021 Oct 14;6(11):3193-3195. doi: 10.1080/23802359.2021.1989331. eCollection 2021.

引用本文的文献

1
Comparative Phylogenetic Analysis for (Aeridinae, Orchidaceae) Based on Six Complete Plastid Genomes.基于六个完整质体基因组的(兰科,鸟巢兰族)比较系统发育分析。
Int J Mol Sci. 2023 Aug 5;24(15):12473. doi: 10.3390/ijms241512473.
2
The complete chloroplast genome sequence of (Orchidaceae, Aeridinae).(兰科,指甲兰亚族)的完整叶绿体基因组序列。
Mitochondrial DNA B Resour. 2021 Sep 24;6(10):3036-3037. doi: 10.1080/23802359.2021.1959459. eCollection 2021.

本文引用的文献

1
The complete plastid genome of (Orchidaceae, Aeridinae).(兰科,指甲兰亚族)的完整质体基因组。
Mitochondrial DNA B Resour. 2019 Nov 12;4(2):3985-3986. doi: 10.1080/23802359.2019.1688702.
2
GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes.GetOrganelle:一个快速且通用的工具包,可用于准确从头组装细胞器基因组。
Genome Biol. 2020 Sep 10;21(1):241. doi: 10.1186/s13059-020-02154-5.
3
UFBoot2: Improving the Ultrafast Bootstrap Approximation.UFBoot2:改进超快bootstrap 逼近算法。
Mol Biol Evol. 2018 Feb 1;35(2):518-522. doi: 10.1093/molbev/msx281.
4
Bandage: interactive visualization of de novo genome assemblies.绷带:从头基因组组装的交互式可视化
Bioinformatics. 2015 Oct 15;31(20):3350-2. doi: 10.1093/bioinformatics/btv383. Epub 2015 Jun 22.
5
IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies.IQ-TREE:一种用于估计最大似然系统发育树的快速且有效的随机算法。
Mol Biol Evol. 2015 Jan;32(1):268-74. doi: 10.1093/molbev/msu300. Epub 2014 Nov 3.
6
MAFFT multiple sequence alignment software version 7: improvements in performance and usability.MAFFT 多序列比对软件版本 7:性能和易用性的改进。
Mol Biol Evol. 2013 Apr;30(4):772-80. doi: 10.1093/molbev/mst010. Epub 2013 Jan 16.
7
Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data.Geneious Basic:一个集成和可扩展的桌面软件平台,用于组织和分析序列数据。
Bioinformatics. 2012 Jun 15;28(12):1647-9. doi: 10.1093/bioinformatics/bts199. Epub 2012 Apr 27.
8
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.SPAdes:一种新的基因组组装算法及其在单细胞测序中的应用
J Comput Biol. 2012 May;19(5):455-77. doi: 10.1089/cmb.2012.0021. Epub 2012 Apr 16.