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(兰科,指甲兰亚族)的完整质体基因组。

Complete plastid genome of (Orchidaceae, Aeridinae).

作者信息

Chen Jin-Liao, Tu Xiong-De, Liu Ding-Kun, Ai Ye

机构信息

Key Laboratory of National Forestry and Grassland Administration for Orchid Conservation and Utilization at College of Landscape Architecture, Fujian Agriculture and Forestry University, Fuzhou, China.

出版信息

Mitochondrial DNA B Resour. 2019 Oct 21;4(2):3687-3688. doi: 10.1080/23802359.2019.1679049.

DOI:10.1080/23802359.2019.1679049
PMID:33366144
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7707440/
Abstract

is one of the five most horticulturally important genera in Orchidaceae. In this study, we assembled the complete plastid genome of an important cultivated species, The plastome was 149,474 bp in length, containing a large single-copy region (LSC) of 85,678 bp, a small single-copy region (SSC) of 12,002 bp, and two inverted repeat regions (IR) of 25,897 bp. A total of 127 genes were predicted, including 38 tRNA, 8 rRNA, and 74 protein-coding genes. Phylogenetic analysis of 21 representative plastome of the subtribe Aeridinae suggested to be sister to and that this pair is sister to .

摘要

是兰科五个最重要的园艺属之一。在本研究中,我们组装了一个重要栽培物种的完整质体基因组,该质体基因组长度为149,474 bp,包含一个85,678 bp的大单拷贝区域(LSC)、一个12,002 bp的小单拷贝区域(SSC)和两个25,897 bp的反向重复区域(IR)。共预测到127个基因,包括38个tRNA、8个rRNA和74个蛋白质编码基因。对万代兰亚族21个代表性质体基因组的系统发育分析表明, 与 是姐妹关系,且这一对与 是姐妹关系。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5ae5/7707440/d2f08b9097cf/TMDN_A_1679049_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5ae5/7707440/d2f08b9097cf/TMDN_A_1679049_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5ae5/7707440/d2f08b9097cf/TMDN_A_1679049_F0001_B.jpg

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Bandage: interactive visualization of de novo genome assemblies.绷带:从头基因组组装的交互式可视化
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一种观赏兰花(兰科)的完整叶绿体基因组。
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