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茄科植物(原产于南非)的完整叶绿体基因组

Complete chloroplast genome of (Solanaceae), a species native to South Africa.

作者信息

Li Zhao, Zhang Xinyi, Zhang Qingde, Yisilam Gulbar

机构信息

Key Laboratory of Plant Stress Biology, School of Life Sciences, Henan University, Kaifeng, China.

Xinjiang Key Laboratory of Special Species Conservation and Regulatory Biology, Key Laboratory of Plant Stress Biology in Arid Land, College of Life Science, Xinjiang Normal University, Urumqi, China.

出版信息

Mitochondrial DNA B Resour. 2020 Jan 21;5(1):756-757. doi: 10.1080/23802359.2020.1715301.

Abstract

, known as African boxthorn or boxthorn, is a shrub in the Solanaceae family. In this study, we characterized the complete chloroplast (cp) genome sequence of using genome skimming data. It had a circular mapping molecular with the length of 155,894 bp, with a large single-copy region (LSC, 86,536 bp) and a small single-copy region (SSC, 18,406 bp) separated by a pair of inverted repeats (IRs, 25,476 bp). The cp genome encodes 113 unique genes, consisting of 79 protein-coding genes, 30 tRNA genes, and 4 rRNA genes, with 20 duplicated genes in the IR regions. The phylogenetic analysis indicated that is sister to the other three species.

摘要

(植物名称未给出),也被称为非洲枸杞或枸杞,是茄科的一种灌木。在本研究中,我们利用基因组浅层测序数据对(植物名称未给出)的完整叶绿体(cp)基因组序列进行了特征分析。它具有一个环状图谱分子,长度为155,894 bp,有一个大单拷贝区域(LSC,86,536 bp)和一个小单拷贝区域(SSC,18,406 bp),由一对反向重复序列(IRs,25,476 bp)隔开。该cp基因组编码113个独特基因,包括79个蛋白质编码基因、30个tRNA基因和4个rRNA基因,在IR区域有20个重复基因。系统发育分析表明,(植物名称未给出)与其他三个(植物名称未给出)物种是姐妹关系。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/db49/7748727/53c42153aadc/TMDN_A_1715301_F0001_B.jpg

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