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基于系统发育分析的(鲈形目,虾虎鱼科)线粒体全基因组

Complete mitochondrial genome of the (Gobiiformes, Gobiidae) with phylogenetic consideration.

作者信息

Wu Hao, Yu Meiya, Zhou Lei

机构信息

Institute of Biopharmaceutical, Zhejiang Pharmaceutical College, Ningbo, China.

出版信息

Mitochondrial DNA B Resour. 2020 Jan 29;5(1):858-859. doi: 10.1080/23802359.2020.1715283.

DOI:10.1080/23802359.2020.1715283
PMID:33366784
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7748747/
Abstract

The complete mitochondrial genome sequence of was sequenced. It was 16,515-nucleotide in length and consisted of 13 protein-coding genes, 2 ribosomal RNA genes, 22 transfer RNA genes, and two non-coding regions (L-strand replication origin and control region), showing conserved gene arrangement with most vertebrates. The phylogenetic analysis based on complete mitochondrial genome of as well as other Gobiiformes species showed that had close relationships with . This study will provide useful genetic informatin for future phylogenetic and taxonomic classification of gobiiformes.

摘要

对[物种名称]的完整线粒体基因组序列进行了测序。其长度为16,515个核苷酸,由13个蛋白质编码基因、2个核糖体RNA基因、22个转运RNA基因以及两个非编码区(轻链复制起点和控制区)组成,与大多数脊椎动物的基因排列具有保守性。基于[物种名称]以及其他鰕虎鱼目物种的完整线粒体基因组的系统发育分析表明,[物种名称]与[另一物种名称]关系密切。本研究将为鰕虎鱼目未来的系统发育和分类学分类提供有用的遗传信息。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/15f3/7748747/6982bb3fe9d6/TMDN_A_1715283_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/15f3/7748747/6982bb3fe9d6/TMDN_A_1715283_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/15f3/7748747/6982bb3fe9d6/TMDN_A_1715283_F0001_B.jpg

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本文引用的文献

1
The complete mitochondrial genome sequence of the giant mudskipper, (Perciformes: gobiidae).弹涂鱼(鲈形目:虾虎鱼科)的完整线粒体基因组序列
Mitochondrial DNA B Resour. 2016 Aug 31;1(1):599-600. doi: 10.1080/23802359.2016.1202742.
2
NOVOPlasty: de novo assembly of organelle genomes from whole genome data.NOVOPlasty:从头组装细胞器基因组的全基因组数据。
Nucleic Acids Res. 2017 Feb 28;45(4):e18. doi: 10.1093/nar/gkw955.
3
MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets.MEGA7:适用于更大数据集的分子进化遗传学分析版本7.0
Mol Biol Evol. 2016 Jul;33(7):1870-4. doi: 10.1093/molbev/msw054. Epub 2016 Mar 22.