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(鲈形目:虾虎鱼科)的完整线粒体基因组序列。

The complete mitochondrial genome sequence of (Gobiiformes: Gobiidae).

作者信息

Shi Wei, Yang Min, Yu Hui

机构信息

College of Life Science, Foshan University, Foshan, Guangdong, China.

CAS Key Laboratory of Tropical Marine Bio-resources and Ecology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, China.

出版信息

Mitochondrial DNA B Resour. 2018 Oct 29;3(2):1208-1209. doi: 10.1080/23802359.2018.1526134.

DOI:10.1080/23802359.2018.1526134
PMID:33474467
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7800525/
Abstract

At present, only several species of genus were described and information of mitochondrial DNA were also just focused on two species. Here, the complete mitochondrial genome of was completely sequenced by high throughput sequencing method. The complete mitochondrial genome was 16,614 bp in length, consisted of 13 protein-coding genes, 22 tRNA genes, 2 rRNA genes, 1 large non-coding control region, and 1 light-strand replication origin. Overall base composition values for the mitochondrial genome were 28.24, 29.20, 16.77, and 25.79% for A, C, G, and T, respectively. The gene arrangement is identical to those in typical fishes. Phylogenetic tree based on 13 protein-coding genes shows that three species of genus did not cluster into one clade.

摘要

目前,仅描述了该属的几个物种,线粒体DNA信息也仅集中在两个物种上。在此,通过高通量测序方法对该属的完整线粒体基因组进行了全序列测定。完整的线粒体基因组长度为16,614 bp,由13个蛋白质编码基因、22个tRNA基因、2个rRNA基因、1个大的非编码控制区和1个轻链复制起点组成。线粒体基因组的总体碱基组成值中,A、C、G和T分别为28.24%、29.20%、16.77%和25.79%。基因排列与典型鱼类中的相同。基于13个蛋白质编码基因构建的系统发育树表明,该属的三个物种没有聚为一个分支。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b6c7/7800525/f65eb6a89c12/TMDN_A_1526134_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b6c7/7800525/f65eb6a89c12/TMDN_A_1526134_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b6c7/7800525/f65eb6a89c12/TMDN_A_1526134_F0001_B.jpg

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本文引用的文献

1
The complete mitochondrial genome sequence of Acentrogobius sp. (Gobiiformes: Gobiidae) and phylogenetic studies of Gobiidae.钝吻虾虎鱼线粒体全基因组序列及虾虎鱼科系统发育研究 (鲈形目:虾虎鱼科)
Mitochondrial DNA A DNA Mapp Seq Anal. 2016 Jul;27(4):2927-8. doi: 10.3109/19401736.2015.1060444. Epub 2015 Jul 7.
2
MEGA6: Molecular Evolutionary Genetics Analysis version 6.0.MEGA6:分子进化遗传学分析版本 6.0。
Mol Biol Evol. 2013 Dec;30(12):2725-9. doi: 10.1093/molbev/mst197. Epub 2013 Oct 16.
3
Complete mitochondrial genome of the striped sandgoby Acentrogobius pflaumii (Perciformes, gobiidae).
条纹沙塘鳢(鲈形目,虾虎鱼科)的完整线粒体基因组
Mitochondrial DNA. 2012 Dec;23(6):420-2. doi: 10.3109/19401736.2012.710213. Epub 2012 Sep 3.
4
Animal mitochondrial genomes.动物线粒体基因组。
Nucleic Acids Res. 1999 Apr 15;27(8):1767-80. doi: 10.1093/nar/27.8.1767.