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[植物名称]的完整叶绿体基因组及其在榆科中的系统发育位置。 (你提供的原文中“and”前缺少具体植物名称,这里用“[植物名称]”代替以便完整表达句子意思)

The complete chloroplast genome of and its phylogenetic position within Ulmaceae.

作者信息

Wang Lingdan, Zhang Riqing, Geng Maolin, Qin Yufeng, Liu Hailong, Li Mimi

机构信息

Central South University of Forestry and Technology, Changsha, China.

Institute of Botany, Jiangsu Province and Chinese Academy of Sciences, Nanjing, China.

出版信息

Mitochondrial DNA B Resour. 2020 May 28;5(3):2182-2183. doi: 10.1080/23802359.2020.1768947. eCollection 2020.

DOI:10.1080/23802359.2020.1768947
PMID:33366962
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7510571/
Abstract

The complete chloroplast genome sequence of the Tertiary relict tree was reported in this study. The chloroplast genome is 158,875 bp in length with a typical angiosperm quantitative structure consisting of a large single copy (87,412 bp) and a small single copy (18,683 bp) separated by a pair of inverted repeat (26,390 bp). Genome annotation revealed a total of 129 genes comprising 84 protein-coding genes, 37 tRNA genes, and eight rRNA genes. Phylogenomic analysis based on the whole plastomes indicated that and formed a well-supported monophyletic clade sister to genus in Ulmaceae.

摘要

本研究报道了第三纪残遗树种的完整叶绿体基因组序列。叶绿体基因组长度为158,875 bp,具有典型的被子植物定量结构,由一个大单拷贝(87,412 bp)和一个小单拷贝(18,683 bp)组成,二者被一对反向重复序列(26,390 bp)隔开。基因组注释显示共有129个基因,包括84个蛋白质编码基因、37个tRNA基因和8个rRNA基因。基于整个质体基因组的系统发育分析表明,[物种名称1]和[物种名称2]在榆科中形成了一个得到充分支持的单系分支,是[属名]属的姐妹分支。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5216/7510571/8044c0c054cf/TMDN_A_1768947_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5216/7510571/8044c0c054cf/TMDN_A_1768947_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5216/7510571/8044c0c054cf/TMDN_A_1768947_F0001_C.jpg

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本文引用的文献

1
Species delimitation in the East Asian species of the relict tree genus Zelkova (Ulmaceae): A complex history of diversification and admixture among species.东亚榉属(榆科)遗留树种的物种划分:物种间多样化和混合的复杂历史。
Mol Phylogenet Evol. 2019 May;134:172-185. doi: 10.1016/j.ympev.2019.02.010. Epub 2019 Feb 12.
2
GeSeq - versatile and accurate annotation of organelle genomes.GeSeq - 细胞器基因组的多功能和准确注释。
Nucleic Acids Res. 2017 Jul 3;45(W1):W6-W11. doi: 10.1093/nar/gkx391.
3
NOVOPlasty: de novo assembly of organelle genomes from whole genome data.
NOVOPlasty:从头组装细胞器基因组的全基因组数据。
Nucleic Acids Res. 2017 Feb 28;45(4):e18. doi: 10.1093/nar/gkw955.
4
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies.RAxML 版本 8:用于系统发育分析和大型系统发育后分析的工具。
Bioinformatics. 2014 May 1;30(9):1312-3. doi: 10.1093/bioinformatics/btu033. Epub 2014 Jan 21.
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MAFFT multiple sequence alignment software version 7: improvements in performance and usability.MAFFT 多序列比对软件版本 7:性能和易用性的改进。
Mol Biol Evol. 2013 Apr;30(4):772-80. doi: 10.1093/molbev/mst010. Epub 2013 Jan 16.
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Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data.Geneious Basic:一个集成和可扩展的桌面软件平台,用于组织和分析序列数据。
Bioinformatics. 2012 Jun 15;28(12):1647-9. doi: 10.1093/bioinformatics/bts199. Epub 2012 Apr 27.
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Selective apoptotic effect of Zelkova serrata twig extract on mouth epidermoid carcinoma through p53 activation.Zelkova serrata 嫩枝提取物通过激活 p53 对口腔表皮样癌细胞的选择性凋亡作用。
Int J Oral Sci. 2012 Jun;4(2):78-84. doi: 10.1038/ijos.2012.14. Epub 2012 Apr 13.