UR SPHERES, University of Liege, Liège, Belgium.
Graduate Program in Ecology and Biodiversity Conservation, Applied Ecology and Conservation Lab, Universidade Estadual de Santa Cruz, Ilhéus, BA, Brazil.
PLoS One. 2020 Dec 28;15(12):e0244220. doi: 10.1371/journal.pone.0244220. eCollection 2020.
Plant species models are among the available tools to predict the future of ecosystems threatened by climate change, habitat loss, and degradation. However, they suffer from low to no inclusion of plant dispersal, which is necessary to predict ecosystem evolution. A variety of seed dispersal models have been conceived for anemochorous and zoochorous plant species, but the coupling between vegetation models and seed dispersal processes remains rare. The main challenge in modelling zoochoric dispersal is simulating animal movements in their complex habitat. Recent developments allow straightforward applications of hidden Markov modelling (HMM) to animal movements, which could ease generalizations when modelling zoochoric seed dispersal. We tested the use of HMM to model seed dispersal by an endangered primate in the Brazilian Atlantic forest, to demonstrate its potential simplicity to simulate seed dispersal processes. We also discuss how to adapt it to other species. We collected information on movement, fruit consumption, deposition, and habitat use of Leontopithecus chrysomelas. We analysed daily trajectories using HMM and built a deterministic Model Of Seed Transfer (MOST), which replicated, with good approximation, the primate's movement and seed deposition patterns as observed in the field. Our results suggest that the dispersal behaviour and short daily-trajectories of L. chrysomelas restrict the species' role in large-scale forest regeneration, but contribute to the prevalence of resource tree species locally, and potentially maintaining tree diversity by preventing local extinction. However, it may be possible to accurately simulate dispersal in an area, without necessarily quantifying variables that influence movement, if the movement can be broken down to step-length and turning angles, and parametrised along with the distribution of gut-transit times. For future objectives, coupling MOST with a DVM could be used to test hypotheses on tree species survival in various scenarios, simulating regeneration and growth at regional scales by including data on main dispersal agents over the area of interest, distribution of tree species, and land use data. The principal advantage of the MOST model is its functionality with data available from the literature as the variables are easy to parametrise. We suggest using the coupled model to perform experiments using only available information, but varying the numbers and species of seed dispersers, or modifying land cover or configuration to test for possible thresholds preventing the extinction of selected tree species.
植物物种模型是预测受气候变化、生境丧失和退化威胁的生态系统未来的可用工具之一。然而,它们存在植物扩散的低纳入或不纳入的问题,而植物扩散对于预测生态系统演化是必要的。已经为风媒和动物传播的植物物种设想了各种种子扩散模型,但植被模型和种子扩散过程之间的耦合仍然很少见。模拟动物传播的主要挑战是模拟其复杂生境中的动物运动。最近的发展允许将隐马尔可夫模型(HMM)直接应用于动物运动,这在模拟动物传播的种子扩散时可以简化概括。我们测试了使用 HMM 来模拟巴西大西洋森林中濒危灵长类动物的种子扩散,以证明其模拟种子扩散过程的简单潜力。我们还讨论了如何将其适应于其他物种。我们收集了关于 Leontopithecus chrysomelas 的运动、果实消耗、沉积和生境利用的信息。我们使用 HMM 分析了每日轨迹,并建立了确定性种子转移模型(MOST),该模型很好地近似复制了灵长类动物的运动和种子沉积模式,与实地观察到的结果一致。我们的结果表明,L. chrysomelas 的扩散行为和短时间的每日轨迹限制了该物种在大规模森林再生中的作用,但有助于局部资源树种的流行,并通过防止局部灭绝来维持树木多样性。然而,如果可以将运动分解为步长和转弯角度,并沿着肠内转运时间的分布进行参数化,而不必量化影响运动的变量,则可能可以在某个区域准确模拟扩散。对于未来的目标,将 MOST 与 DVM 耦合可以用来测试各种情况下树种生存的假设,通过在感兴趣的区域内包含主要传播剂的数据、树种分布和土地利用数据,模拟区域尺度的再生和生长。MOST 模型的主要优点是其功能可以使用文献中的数据,因为变量易于参数化。我们建议使用耦合模型仅使用可用信息进行实验,但可以改变种子传播者的数量和物种,或修改土地覆盖或配置,以测试可能阻止选定树种灭绝的阈值。