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基于生物信息学的胃癌中胶原类型 X 阿尔法 1(COL10A1)表达分析及其预后意义。

Analysis of Collagen type X alpha 1 (COL10A1) expression and prognostic significance in gastric cancer based on bioinformatics.

机构信息

Center of Gastrointestinal Disease, The Affiliated Changzhou NO.2 People's Hospital of Nanjing Medical University , Changzhou, China.

出版信息

Bioengineered. 2021 Dec;12(1):127-137. doi: 10.1080/21655979.2020.1864912.

Abstract

Collagen type X alpha 1 (COL10A1) is a member of the collagen family and the main matrix component. However, COL10A1 expression and prognosis relationship remains unclear in gastric cancer (GC). Through the analysis of database of Oncomine, the Cancer Genome Atlas (TCGA) as well as the Gene Expression Omnibus (GEO), in contrast to the tissue of normal gastric, COL10A1 in gastric cancer, had been upregulated. The high expression of COL10A1 was obviously related to T stage ( = 0.025) and lymph node metastasis ( = 0.025). It has been illustrated by the analysis of logistic regression that COL10A1's heightened expression in gastric cancer had been essentially linked with pathological stage, tumor differentiation, and T classification. The Kaplan-Meier curve in the Kaplan-Meier plotter database ( = 0.0371) and GSE84437 ( = 0.002) indicate that patients with high COL10A1 expression possess poor prognosis, specifically GC patients with lymph node metastasis have it. TCGA's Multivariate analysis ( = 0.025) and GSE84437 dataset ( = 0.034) show that high expression COL10A1 is a key independent predictor of poor overall survival. Searching KEGG pathway enrichment by GSEA, the results suggested that 29 pathways were enriched. qRT-PCR technique was used for verification of the COL10A1's high expression in gastric cancer in contrast to the normal gastric tissues. In conclusion, COL10A1 is of great importance in predicting the survival rate of GC patients.

摘要

胶原 X 型α 1 (COL10A1)是胶原家族的成员,也是主要的基质成分。然而,COL10A1 在胃癌(GC)中的表达和预后关系尚不清楚。通过对 Oncomine、癌症基因组图谱(TCGA)和基因表达综合数据库(GEO)的数据库分析,与正常胃组织相比,胃癌中的 COL10A1 表达上调。COL10A1 的高表达与 T 分期(=0.025)和淋巴结转移(=0.025)明显相关。通过逻辑回归分析表明,COL10A1 在胃癌中的高表达与病理分期、肿瘤分化和 T 分类密切相关。Kaplan-Meier 曲线在 Kaplan-Meier 绘图仪数据库(=0.0371)和 GSE84437(=0.002)中表明,COL10A1 高表达的患者预后不良,特别是有淋巴结转移的 GC 患者。TCGA 的多变量分析(=0.025)和 GSE84437 数据集(=0.034)表明,COL10A1 的高表达是总生存率不良的关键独立预测因子。通过 GSEA 搜索 KEGG 通路富集,结果表明有 29 条通路富集。qRT-PCR 技术用于验证胃癌中 COL10A1 的高表达与正常胃组织相比。总之,COL10A1 对预测 GC 患者的生存率具有重要意义。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6d4b/8291830/3adcdb42901a/KBIE_A_1864912_UF0001_OC.jpg

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