Guillemin Anissa, H Stumpf Michael P
School of BioScience, University of Melbourne, Melbourne, Parkville 3010, VIC, Australia.
School of Mathematics & Statistics, University of Melbourne, Melbourne, Parkville 3010, VIC, Australia.
Math Biosci Eng. 2020 Nov 10;17(6):7916-7930. doi: 10.3934/mbe.2020402.
Statistical physics provides a useful perspective for the analysis of many complex systems; it allows us to relate microscopic fluctuations to macroscopic observations. Developmental biology, but also cell biology more generally, are examples where apparently robust behaviour emerges from highly complex and stochastic sub-cellular processes. Here we attempt to make connections between different theoretical perspectives to gain qualitative insights into the types of cell-fate decision making processes that are at the heart of stem cell and developmental biology. We discuss both dynamical systems as well as statistical mechanics perspectives on the classical Waddington or epigenetic landscape. We find that non-equilibrium approaches are required to overcome some of the shortcomings of classical equilibrium statistical thermodynamics or statistical mechanics in order to shed light on biological processes, which, almost by definition, are typically far from equilibrium.
统计物理学为分析许多复杂系统提供了一个有用的视角;它使我们能够将微观涨落与宏观观测联系起来。发育生物学,以及更广泛意义上的细胞生物学,都是这样的例子,即看似稳健的行为源自高度复杂且随机的亚细胞过程。在这里,我们试图在不同的理论视角之间建立联系,以定性地深入了解处于干细胞和发育生物学核心的细胞命运决定过程的类型。我们讨论了关于经典的沃丁顿或表观遗传景观的动力学系统以及统计力学视角。我们发现,为了阐明生物学过程,需要采用非平衡方法来克服经典平衡统计热力学或统计力学的一些缺点,因为生物学过程几乎从定义上来说就通常远离平衡态。