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靶向敲除 hir1 改变了白腐菌糙皮侧耳中潜在木质纤维素分解基因的转录表达模式。

Targeted disruption of hir1 alters the transcriptional expression pattern of putative lignocellulolytic genes in the white-rot fungus Pleurotus ostreatus.

机构信息

Graduate School of Agriculture, Kyoto University, Sakyo-ku, Kyoto 606-8502, Japan.

Graduate School of Agriculture, Kyoto University, Sakyo-ku, Kyoto 606-8502, Japan.

出版信息

Fungal Genet Biol. 2021 Feb;147:103507. doi: 10.1016/j.fgb.2020.103507. Epub 2020 Dec 28.

DOI:10.1016/j.fgb.2020.103507
PMID:33383191
Abstract

Pleurotus ostreatus is frequently used in molecular genetics and genomic studies on white-rot fungi because various molecular genetic tools and relatively well-annotated genome databases are available. To explore the molecular mechanisms underlying wood lignin degradation by P. ostreatus, we performed mutational analysis of a newly isolated mutant UVRM28 that exhibits decreased lignin-degrading ability on the beech wood sawdust medium. We identified that a mutation in the hir1 gene encoding a putative histone chaperone, which probably plays an important role in DNA replication-independent nucleosome assembly, is responsible for the mutant phenotype. The expression pattern of ligninolytic genes was altered in hir1 disruptants. The most highly expressed gene vp2 was significantly inactivated, whereas the expression of vp1 was remarkably upregulated (300-400 fold) at the transcription level. Conversely, many cellulolytic and xylanolytic genes were upregulated in hir1 disruptants. Chromatin immunoprecipitation analysis suggested that the histone modification status was altered in the 5'-upstream regions of some of the up- and down-regulated lignocellulolytic genes in hir1 disruptants compared with that in the 20b strain. Hence, our data provide new insights into the regulatory mechanisms of lignocellulolytic genes in P. ostreatus.

摘要

糙皮侧耳常被用于白腐真菌的分子遗传学和基因组学研究,因为其拥有各种分子遗传学工具和相对完善注释的基因组数据库。为了探索糙皮侧耳降解木质素的分子机制,我们对一个新分离的突变体 UVRM28 进行了诱变分析,该突变体在山毛榉木屑培养基上表现出木质素降解能力下降的表型。我们发现,编码组蛋白伴侣的 hir1 基因突变,可能在非依赖于 DNA 复制的核小体组装中发挥重要作用,是导致突变表型的原因。木质素降解基因的表达模式在 hir1 缺失突变体中发生改变。高度表达的 vp2 基因失活,而 vp1 基因的转录水平显著上调(300-400 倍)。相反,许多纤维素酶和木聚糖酶基因在 hir1 缺失突变体中上调。染色质免疫沉淀分析表明,与 20b 菌株相比,hir1 缺失突变体中一些上调和下调的木质纤维素降解基因的 5'-上游区域的组蛋白修饰状态发生了改变。因此,我们的数据为糙皮侧耳木质纤维素降解基因的调控机制提供了新的见解。

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Targeted disruption of hir1 alters the transcriptional expression pattern of putative lignocellulolytic genes in the white-rot fungus Pleurotus ostreatus.靶向敲除 hir1 改变了白腐菌糙皮侧耳中潜在木质纤维素分解基因的转录表达模式。
Fungal Genet Biol. 2021 Feb;147:103507. doi: 10.1016/j.fgb.2020.103507. Epub 2020 Dec 28.
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Pleurotus ostreatus as a model mushroom in genetics, cell biology, and material sciences.糙皮侧耳(平菇)作为遗传学、细胞生物学和材料科学的模式蘑菇。
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