Suppr超能文献

将癌症基因组图谱用作本科课堂的探究工具。

Using The Cancer Genome Atlas as an Inquiry Tool in the Undergraduate Classroom.

作者信息

Hankey William, Zanghi Nicholas, Crow Mackenzie M, Dow Whitney H, Kratz Austin, Robinson Ashley M, Robinson Meaghan R, Segarra Verónica A

机构信息

Department of Pathology, Duke Cancer Center, Duke University, Durham, NC, United States.

Department of Biology, High Point University, High Point, NC, United States.

出版信息

Front Genet. 2020 Dec 16;11:573992. doi: 10.3389/fgene.2020.573992. eCollection 2020.

Abstract

Undergraduate students in the biomedical sciences are often interested in future health-focused careers. This presents opportunities for instructors in genetics, molecular biology, and cancer biology to capture their attention using lab experiences built around clinically relevant data. As biomedical science in general becomes increasingly dependent on high-throughput data, well-established scientific databases such as The Cancer Genome Atlas (TCGA) have become publicly available tools for medically relevant inquiry. The best feature of this database is that it bridges the molecular features of cancer to human clinical outcomes-allowing students to see a direct connection between the molecular sciences and their future professions. We have developed and tested a learning module that leverages the power of TCGA datasets to engage students to use the data to generate and test hypotheses and to apply statistical tests to evaluate significance.

摘要

生物医学科学专业的本科生通常对未来以健康为重点的职业感兴趣。这为遗传学、分子生物学和癌症生物学领域的教师提供了机会,他们可以利用围绕临床相关数据构建的实验室体验来吸引学生的注意力。随着一般生物医学科学越来越依赖高通量数据,诸如癌症基因组图谱(TCGA)等成熟的科学数据库已成为医学相关研究的公开可用工具。该数据库的最大优点是它将癌症的分子特征与人类临床结果联系起来,使学生能够看到分子科学与其未来职业之间的直接联系。我们开发并测试了一个学习模块,该模块利用TCGA数据集的力量,促使学生使用这些数据来生成和检验假设,并应用统计测试来评估显著性。

相似文献

1
Using The Cancer Genome Atlas as an Inquiry Tool in the Undergraduate Classroom.
Front Genet. 2020 Dec 16;11:573992. doi: 10.3389/fgene.2020.573992. eCollection 2020.
2
Student and educator experiences of maternal-child simulation-based learning: a systematic review of qualitative evidence protocol.
JBI Database System Rev Implement Rep. 2015 Jan;13(1):14-26. doi: 10.11124/jbisrir-2015-1694.
4
Killing two birds with one stone: Model plant systems as a tool to teach the fundamental concepts of gene expression while analyzing biological data.
Biochim Biophys Acta Gene Regul Mech. 2017 Jan;1860(1):166-173. doi: 10.1016/j.bbagrm.2016.04.012. Epub 2016 May 4.
5
A Bioinformatics Module for Use in an Introductory Biology Laboratory.
Am Biol Teach. 2012 May;74(5):318-322. doi: 10.1525/abt.2012.74.5.6.
6
Assessing an effective undergraduate module teaching applied bioinformatics to biology students.
PLoS Comput Biol. 2018 Jan 11;14(1):e1005872. doi: 10.1371/journal.pcbi.1005872. eCollection 2018 Jan.
8
Integrating Bioinformatics Tools Into Inquiry-Based Molecular Biology Laboratory Education Modules.
Front Educ (Lausanne). 2021 Jul;6. doi: 10.3389/feduc.2021.711403. Epub 2021 Jul 28.
9
Using Next-Generation Sequencing to Explore Genetics and Race in the High School Classroom.
CBE Life Sci Educ. 2017 Summer;16(2). doi: 10.1187/cbe.16-09-0281.

引用本文的文献

1
An Intelligent Classification System for Cancer Detection Based on DNA Methylation Using ML and Semantic Knowledge in Healthcare.
Comput Intell Neurosci. 2022 Oct 10;2022:4334852. doi: 10.1155/2022/4334852. eCollection 2022.
2
Adapting Undergraduate Research to Remote Work to Increase Engagement.
Biophysicist (Rockv). 2021 Sep;2(2):28-32. doi: 10.35459/tbp.2021.000199. Epub 2021 Aug 9.
4
A Bioinformatic Approach to Enhance Undergraduate Student Understanding of the Cancer-Immunity Cycle.
J Cancer Educ. 2023 Jun;38(3):991-999. doi: 10.1007/s13187-022-02221-4. Epub 2022 Sep 12.
5
Online Tools for Teaching Cancer Bioinformatics.
J Microbiol Biol Educ. 2021 Aug 31;22(2). doi: 10.1128/jmbe.00167-21. eCollection 2021 Fall.

本文引用的文献

1
OncoSim and OncoWiki: an authentic learning approach to teaching cancer genomics.
BMC Med Educ. 2019 Nov 7;19(1):407. doi: 10.1186/s12909-019-1812-7.
2
R You Still Using Excel? The Advantages of Modern Software Tools for Health Technology Assessment.
Value Health. 2019 May;22(5):575-579. doi: 10.1016/j.jval.2019.01.003.
5
An Integrated TCGA Pan-Cancer Clinical Data Resource to Drive High-Quality Survival Outcome Analytics.
Cell. 2018 Apr 5;173(2):400-416.e11. doi: 10.1016/j.cell.2018.02.052.
7
A Call to Develop Course-Based Undergraduate Research Experiences (CUREs) for Nonmajors Courses.
CBE Life Sci Educ. 2017 Summer;16(2). doi: 10.1187/cbe.16-12-0352.
8
Gene name errors are widespread in the scientific literature.
Genome Biol. 2016 Aug 23;17(1):177. doi: 10.1186/s13059-016-1044-7.
9
Improving Underrepresented Minority Student Persistence in STEM.
CBE Life Sci Educ. 2016 fall;15(3). doi: 10.1187/cbe.16-01-0038.
10
Comprehensive Molecular Portraits of Invasive Lobular Breast Cancer.
Cell. 2015 Oct 8;163(2):506-19. doi: 10.1016/j.cell.2015.09.033.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验