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人工智能、大数据和机器学习方法在精准医学和药物发现中的应用。

Artificial Intelligence, Big Data and Machine Learning Approaches in Precision Medicine & Drug Discovery.

机构信息

In silico Research Laboratory, Eminent Biosciences, Mahalakshmi Nagar, Indore - 452010, Madhya Pradesh, India.

Department of Zoology, Nizam College, Osmania University, Hyderabad - 500001, Telangana State, India.

出版信息

Curr Drug Targets. 2021;22(6):631-655. doi: 10.2174/1389450122999210104205732.

Abstract

Artificial Intelligence revolutionizes the drug development process that can quickly identify potential biologically active compounds from millions of candidate within a short period. The present review is an overview based on some applications of Machine Learning based tools, such as GOLD, Deep PVP, LIB SVM, etc. and the algorithms involved such as support vector machine (SVM), random forest (RF), decision tree and Artificial Neural Network (ANN), etc. at various stages of drug designing and development. These techniques can be employed in SNP discoveries, drug repurposing, ligand-based drug design (LBDD), Ligand-based Virtual Screening (LBVS) and Structure- based Virtual Screening (SBVS), Lead identification, quantitative structure-activity relationship (QSAR) modeling, and ADMET analysis. It is demonstrated that SVM exhibited better performance in indicating that the classification model will have great applications on human intestinal absorption (HIA) predictions. Successful cases have been reported which demonstrate the efficiency of SVM and RF models in identifying JFD00950 as a novel compound targeting against a colon cancer cell line, DLD-1, by inhibition of FEN1 cytotoxic and cleavage activity. Furthermore, a QSAR model was also used to predict flavonoid inhibitory effects on AR activity as a potent treatment for diabetes mellitus (DM), using ANN. Hence, in the era of big data, ML approaches have been evolved as a powerful and efficient way to deal with the huge amounts of generated data from modern drug discovery to model small-molecule drugs, gene biomarkers and identifying the novel drug targets for various diseases.

摘要

人工智能彻底改变了药物开发流程,能够在短时间内从数百万种候选物中快速识别出具有潜在生物活性的化合物。本综述基于一些基于机器学习工具的应用,如 GOLD、Deep PVP、LIB SVM 等,以及涉及的算法,如支持向量机 (SVM)、随机森林 (RF)、决策树和人工神经网络 (ANN) 等,介绍了它们在药物设计和开发的各个阶段的应用。这些技术可用于 SNP 发现、药物重定位、基于配体的药物设计 (LBDD)、基于配体的虚拟筛选 (LBVS) 和基于结构的虚拟筛选 (SBVS)、先导化合物识别、定量构效关系 (QSAR) 建模和 ADMET 分析。结果表明,SVM 在指示分类模型将在人类肠道吸收 (HIA) 预测方面具有很好的应用方面表现出更好的性能。已经报道了成功案例,证明了 SVM 和 RF 模型在识别 JFD00950 作为一种新型化合物,通过抑制 FEN1 细胞毒性和切割活性,靶向结肠癌细胞系 DLD-1 方面的有效性。此外,还使用 ANN 建立了 QSAR 模型,预测黄酮类化合物对 AR 活性的抑制作用,作为治疗糖尿病 (DM) 的有效方法。因此,在大数据时代,机器学习方法已经成为处理现代药物发现产生的大量数据的有效方法,用于构建小分子药物、基因生物标志物和识别各种疾病的新型药物靶点。

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