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[两种淡水螺(耳萝卜螺和三旋扁卷螺)肠道菌群多样性的高通量测序分析]

[High-throughput sequencing analysis of intestinal flora diversity of two freshwater snails (Radix auricularia and Planorbella trivolvis)].

作者信息

Hu Zongfu, Chang Jie, Tong Qing, Yu Jianhua, Li Shuguo, Niu Huaxin

机构信息

College of Animal Science and Technology, Inner Mongolia University for Nationalities, Tongliao 028000, Inner Mongolia, China.

College of Veterinary Medicine, Northeast Agricultural University, Harbin 150038, Heilongjiang, China.

出版信息

Sheng Wu Gong Cheng Xue Bao. 2020 Dec 25;36(12):2622-2634. doi: 10.13345/j.cjb.200322.

DOI:10.13345/j.cjb.200322
PMID:33398959
Abstract

Freshwater snail is an important biological group in aquatic ecosystem and an intermediate host of many parasites. Intestinal flora plays an important role in animal energy metabolism and resistance to pathogens. We analyzed the intestinal microbiota diversity of Radix auricularia (RA) and Planorbella trivolvis (PL) by 16S rRNA high-throughput sequencing. At the phylum level, RA had 23 phyla, including Proteobacteria (33.63%), Cyanobacteria (15.33%), Chloroflexi (13.95%), and Actinomycetes (12.99%). PL had 13 phyla, including Proteobacteria (54.88%), Bacteroidetes (28.49%), and Actinomycetes (7.65%). At the genus level, there were 445 genera in RA, including Pleurocapsa, Thiodictyon, Leptotrichia, and Nocardioides. There were 238 genera in PL, including Cloacibacterium, OM60NOR5_clade, Pseudomonas, and Rhodobacter. Ninety-three genera were the common core flora of the two snail species (all the samples were present), and 27 genera had an abundance greater than 0.5%. The structure of intestinal microbiota was significantly different between the two groups (P=0.027). We performed the functional prediction of intestinal microbiota using Phylogenetic Investigation of Communities by Reconstruction of Unobserved States (PICRUSt), and the results show that the KEGG functional composition of the intestinal flora of the two snails was similar, and the abundance of the amino acid metabolism, carbohydrate metabolism and membrane transport were large. In summary, the intestinal microbiota of the two snails was high in diversity and significantly different, but there were a large number of common core flora.

摘要

淡水螺是水生生态系统中的重要生物类群,也是多种寄生虫的中间宿主。肠道菌群在动物能量代谢和抵抗病原体方面发挥着重要作用。我们通过16S rRNA高通量测序分析了耳萝卜螺(RA)和三带平扁螺(PL)的肠道微生物群多样性。在门水平上,RA有23个门,包括变形菌门(33.63%)、蓝细菌门(15.33%)、绿弯菌门(13.95%)和放线菌门(12.99%)。PL有13个门,包括变形菌门(54.88%)、拟杆菌门(28.49%)和放线菌门(7.65%)。在属水平上,RA有445个属,包括集球藻属、硫网菌属、纤毛菌属和诺卡氏菌属。PL有238个属,包括泄殖腔杆菌属、OM60NOR5进化枝、假单胞菌属和红杆菌属。93个属是两种螺类的共同核心菌群(所有样本均有),27个属的丰度大于0.5%。两组之间肠道微生物群的结构存在显著差异(P = 0.027)。我们使用未观察状态重建的群落系统发育研究(PICRUSt)对肠道微生物群进行功能预测,结果表明两种螺类肠道菌群的KEGG功能组成相似,氨基酸代谢、碳水化合物代谢和膜转运的丰度较大。综上所述,两种螺类的肠道微生物群多样性高且差异显著,但存在大量共同的核心菌群。

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