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两种黄貂鱼(软骨鱼纲:鳐形目)的完整线粒体基因组特征及比较:地中海的赤魟和尖犁头鳐。

Characterization and comparison of the complete mitochondrial genomes of two stingrays, Dasyatis pastinaca and Dasyatis tortonesei (Myliobatiformes: Dasyatidae) from the Mediterranean Sea.

机构信息

Conservation Biology Research Group, Department of Biology, University of Malta, Msida, Malta.

出版信息

Mol Biol Rep. 2021 Jan;48(1):219-226. doi: 10.1007/s11033-020-06038-6. Epub 2021 Jan 5.

Abstract

This work represents the complete mitochondrial genomes of two stingrays, Dasyatis pastinaca and Dasyatis tortonesei, from the Mediterranean Sea. The mitogenomes of these two species were obtained through whole generation sequencing and annotated. These mitogenomes were found to be 17,713 bp and 17,630 bp respectively and each contained 37 genes, that is 13 protein-coding genes (PCGs), 22 transfer RNA (tRNA) genes and two ribosomal RNA (rRNA) genes, a control region and the origin of L-strand replication (O). All PCGs begin with the codon ATG, except for cytochrome c oxidase subunit 1 (COX1) gene, while two PCGs end with an incomplete termination codon. All tRNA genes are able to fold into their typical cloverleaf secondary structures, except for tRNA-Ser1 which lacks the dihydrouracil arm. The control region was 1982 bp and 1889 bp for D. pastinaca and D. tortonesei respectively. Phylogenetic analysis using Bayesian Inference confirmed the occurrence of the genus Dasyatis within the monophyletic subfamily Dasyatinae. This study adds on genetic resources available for these two stingray species.

摘要

本研究报道了来自地中海的两种黄貂鱼,赤魟(Dasyatis pastinaca)和孔鳐(Dasyatis tortonesei)的完整线粒体基因组。通过全基因组测序和注释获得了这两个物种的线粒体基因组。这两个线粒体基因组分别长 17713bp 和 17630bp,包含 37 个基因,即 13 个蛋白编码基因(PCGs)、22 个转移 RNA(tRNA)基因和 2 个核糖体 RNA(rRNA)基因、一个控制区和 L 链复制起点(O)。所有 PCGs 均以 ATG 起始,除细胞色素 c 氧化酶亚基 1(COX1)基因外,两个 PCGs 以不完整的终止密码子结束。所有 tRNA 基因均能折叠成典型的三叶草二级结构,除 tRNA-Ser1 外,其缺乏二氢尿嘧啶臂。控制区分别为 1982bp 和 1889bp。基于贝叶斯推断的系统发育分析证实了黄貂鱼属在单系亚科黄貂鱼亚科中的发生。本研究为这两种黄貂鱼增加了遗传资源。

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