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真核生物错配修复系统的复杂进化由新型古菌基因组揭示。

Complex Evolution of the Mismatch Repair System in Eukaryotes is Illuminated by Novel Archaeal Genomes.

机构信息

Instituto de Biociências, Universidade de São Paulo (USP), Rua do Matão, trav. 14, A101, CEP., São Paulo, 05508-090, Brazil.

Max-Planck-Institut für Planzenzüchtungsforschung, Carl-von-Linné-Weg 10, 50829, Cologne, Germany.

出版信息

J Mol Evol. 2021 Feb;89(1-2):12-18. doi: 10.1007/s00239-020-09979-5. Epub 2021 Jan 7.

DOI:10.1007/s00239-020-09979-5
PMID:33409543
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7884376/
Abstract

Repairing DNA damage is one of the most important functions of the 'housekeeping' proteins, as DNA molecules are constantly subject to different kinds of damage. An important mechanism of DNA repair is the mismatch repair system (MMR). In eukaryotes, it is more complex than it is in bacteria or Archaea due to an inflated number of paralogues produced as a result of an extensive process of gene duplication and further specialization upon the evolution of the first eukaryotes, including an important part of the meiotic machinery. Recently, the discovery and sequencing of Asgard Archaea allowed us to revisit the MMR system evolution with the addition of new data from a group that is closely related to the eukaryotic ancestor. This new analysis provided evidence for a complex evolutionary history of eukaryotic MMR: an archaeal origin for the nuclear MMR system in eukaryotes, with subsequent acquisitions of other MMR systems from organelles.

摘要

修复 DNA 损伤是“管家”蛋白最重要的功能之一,因为 DNA 分子经常受到各种损伤。DNA 修复的一个重要机制是错配修复系统 (MMR)。在真核生物中,由于在真核生物进化过程中发生了广泛的基因复制和进一步特化,导致产生了大量的同源基因,因此该系统比细菌或古菌中的更为复杂,其中包括减数分裂机制的重要部分。最近,Asgard 古菌的发现和测序使我们能够通过添加与真核生物祖先密切相关的一组新数据,重新审视 MMR 系统的进化。这项新分析为真核生物 MMR 的复杂进化历史提供了证据:真核生物核 MMR 系统的古菌起源,随后从细胞器中获得了其他 MMR 系统。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f01f/7884376/a6ec1c8e88fb/239_2020_9979_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f01f/7884376/e1aeb2d4e5b4/239_2020_9979_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f01f/7884376/8dbf7a9ca23f/239_2020_9979_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f01f/7884376/a6ec1c8e88fb/239_2020_9979_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f01f/7884376/e1aeb2d4e5b4/239_2020_9979_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f01f/7884376/8dbf7a9ca23f/239_2020_9979_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f01f/7884376/a6ec1c8e88fb/239_2020_9979_Fig3_HTML.jpg

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本文引用的文献

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Bacterial EndoMS/NucS acts as a clamp-mediated mismatch endonuclease to prevent asymmetric accumulation of replication errors.细菌内切酶 NucS 作为一种夹介导的错配内切酶,可防止复制错误的不对称积累。
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Asgard archaea illuminate the origin of eukaryotic cellular complexity.古菌 Asgard 揭示了真核细胞复杂性的起源。
Nature. 2017 Jan 19;541(7637):353-358. doi: 10.1038/nature21031. Epub 2017 Jan 11.
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Evolution of bacterial recombinase A (recA) in eukaryotes explained by addition of genomic data of key microbial lineages.通过添加关键微生物谱系的基因组数据解释真核生物中细菌重组酶A(recA)的进化。
Proc Biol Sci. 2016 Oct 12;283(1840). doi: 10.1098/rspb.2016.1453.
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IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies.IQ-TREE:一种用于估计最大似然系统发育树的快速且有效的随机算法。
Mol Biol Evol. 2015 Jan;32(1):268-74. doi: 10.1093/molbev/msu300. Epub 2014 Nov 3.
7
Evolution of replicative DNA polymerases in archaea and their contributions to the eukaryotic replication machinery.古菌中复制 DNA 聚合酶的进化及其对真核复制机制的贡献。
Front Microbiol. 2014 Jul 21;5:354. doi: 10.3389/fmicb.2014.00354. eCollection 2014.
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Nucleotide excision repair in eukaryotes.真核生物中的核苷酸切除修复。
Cold Spring Harb Perspect Biol. 2013 Oct 1;5(10):a012609. doi: 10.1101/cshperspect.a012609.
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Base excision repair.碱基切除修复。
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