Sloan Daniel B, Broz Amanda K, Kuster Shady A, Muthye Viraj, Peñafiel-Ayala Alejandro, Marron Jennifer R, Lavrov Dennis V, Brieba Luis G
Department of Biology, Colorado State University, Fort Collins, CO, USA.
Cell and Molecular Biology Program, Colorado State University, Fort Collins, CO, USA.
bioRxiv. 2024 Jul 20:2024.07.17.603841. doi: 10.1101/2024.07.17.603841.
The gene family is distributed across the tree of life and is involved in recombination, DNA repair, and protein translation. Multiple evolutionary processes have expanded the set of genes in plants relative to other eukaryotes. Here, we investigate the origins and functions of these plant-specific genes. Land plants, green algae, red algae, and glaucophytes share cyanobacterial-like and genes that presumably were gained via plastid endosymbiotic gene transfer. was subsequently lost in some taxa, including seed plants, whereas was duplicated in Viridiplantae (i.e., land plants and green algae) with widespread retention of both resulting paralogs. Viridiplantae also have two anciently duplicated copies of the eukaryotic gene (i.e., and ) and acquired via horizontal gene transfer - potentially from a nucleocytovirus. Despite sharing the same name, "plant " is not directly related to the gene known as in some fungi and animals, which may be an ancestral eukaryotic gene acquired via mitochondrial endosymbiosis and subsequently lost in most eukaryotic lineages. There has been substantial progress in understanding the functions of and / in plants, but the roles of the cyanobacterial-like and genes remain uncharacterized. Known functions of bacterial homologs and predicted protein structures, including fusions to diverse nuclease domains, provide hypotheses about potential molecular mechanisms. Because most plant-specific MutS proteins are targeted to the mitochondria and/or plastids, the expansion of this family appears to have played a large role in shaping plant organelle genetics.
该基因家族分布于整个生命之树,参与重组、DNA修复和蛋白质翻译。相对于其他真核生物,多种进化过程扩大了植物中的基因集。在这里,我们研究这些植物特异性基因的起源和功能。陆地植物、绿藻、红藻和灰胞藻共享类似蓝细菌的基因,这些基因可能是通过质体内共生基因转移获得的。随后,该基因在包括种子植物在内的一些分类群中丢失,而在绿藻门(即陆地植物和绿藻)中发生了复制,两个产生的旁系同源基因都广泛保留。绿藻门还拥有真核基因的两个古老复制副本(即 和 ),并通过水平基因转移获得了 ,可能来自核质巨DNA病毒。尽管名称相同,但“植物 ”与某些真菌和动物中称为 的基因没有直接关系,后者可能是通过线粒体内共生获得的祖先真核基因,随后在大多数真核生物谱系中丢失。在理解植物中 和 / 的功能方面已经取得了重大进展,但类似蓝细菌的 和 基因的作用仍未得到表征。细菌同源物的已知功能和预测的蛋白质结构,包括与多种核酸酶结构域的融合,为潜在的分子机制提供了假设。由于大多数植物特异性MutS蛋白定位于线粒体和/或质体,这个家族的扩张似乎在塑造植物细胞器遗传学方面发挥了重要作用。