Bibi Fehmida, Azhar Esam Ibraheem
Special Infectious Agents Unit, King Fahd Medical Research Center.
Department of Medical Laboratory Technology, Faculty of Applied Medical Sciences, King Abdulaziz University, 21589 Jeddah, Saudi Arabia.
Saudi J Biol Sci. 2021 Jan;28(1):847-854. doi: 10.1016/j.sjbs.2020.11.021. Epub 2020 Nov 11.
Microbial communities are linked with marine sponge are diverse in their structure and function. Our understanding of the sponge-associated microbial diversity is limited especially from Red Sea in Saudi Arabia where few species of sponges have been studied. Here we used pyrosequencing to study two marine sponges and coral species sampled from Obhur region from Red sea in Jeddah. A total of 168 operational taxonomic units (OTUs) were identified from . Taxonomic identification of tag sequences of 16S ribosomal RNA revealed 6 different bacterial phyla and 9 different classes. A proportion of unclassified reads were was also observed in sponges and coral sample. We found diverse bacterial communities associated with two sponges and a coral sample. Diversity and richness estimates based on OUTs revealed that sponge had significantly high bacterial diversity. The identified OTUs showed unique clustering in three sponge samples as revealed by Principal coordinate analysis (PCoA). (88-95%) was dominant phyla alonwith , , , and Seventeen different genera were identified where genus was dominant in all three samples. This is first study to assess bacterial communities of sponge and coral sample that have never been studied before to unravel their microbial communities using 454-pyrosequencing method.
与海洋海绵相关的微生物群落结构和功能多样。我们对与海绵相关的微生物多样性的了解有限,尤其是来自沙特阿拉伯红海地区的,那里很少有海绵物种被研究过。在这里,我们使用焦磷酸测序法研究了从吉达红海奥布尔地区采集的两种海洋海绵和珊瑚物种。从……中总共鉴定出168个操作分类单元(OTU)。16S核糖体RNA标签序列的分类鉴定揭示了6个不同的细菌门和9个不同的纲。在海绵和珊瑚样本中也观察到一定比例的未分类读数。我们发现与两种海绵和一个珊瑚样本相关的细菌群落多样。基于OUTs的多样性和丰富度估计表明,海绵具有显著高的细菌多样性。主坐标分析(PCoA)显示,在三个海绵样本中,所鉴定的OTU呈现出独特的聚类。(88 - 95%)是主要门类,同时还有……、……、……和……。鉴定出了17个不同的属,其中……属在所有三个样本中占主导地位。这是首次使用454焦磷酸测序法评估从未被研究过的海绵和珊瑚样本的细菌群落,以揭示它们的微生物群落。