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. 中ERF基因家族的全基因组分析及表达模式

Genome-Wide Analysis and the Expression Pattern of the ERF Gene Family in .

作者信息

Zhang Qian, Zhou Wen, Li Bin, Li Lin, Fu Meng, Zhou Li, Yu Xiaoding, Wang Donghao, Wang Zhezhi

机构信息

National Engineering Laboratory for Resource Development of Endangered Crude Drugs in Northwest China, Key Laboratory of the Ministry of Education for Medicinal Resources and Natural Pharmaceutical Chemistry, College of Life Sciences, Shaanxi Normal University, Xi'an 710119, China.

出版信息

Plants (Basel). 2021 Jan 11;10(1):133. doi: 10.3390/plants10010133.

Abstract

is a well-known medicinal herb currently used as a remedy for depression as it contains many high levels of secondary metabolites. The ethylene response factor (ERF) family encodes transcriptional regulators with multiple functions that play a vital role in the diverse developmental and physiological processes of plants, which can protect plants from various stresses by regulating the expression of genes. Although the function of several genes from other plants has been further confirmed, is the first sequenced species in Malpighiales, and no information regarding the has been reported thus far. In this study, a total of 101 genes were identified from . A systematic and thorough bioinformatic analysis of the ERF family was performed using the genomic database of . According to the phylogenetic tree analysis, were further classified into 11 subfamilies. Gene ontology (GO) analysis suggested that most of the likely participate in the biological processes of plants. The cis-elements were mainly divided into five categories, associated with the regulation of gene transcription, response to various stresses, and plant development. Further analysis of the expression patterns showed that the stress-responsive responded to different treatments. This work systematically analyzed using the genome sequences of . Our results provide a theoretical basis for further investigation of the function of stress-related in .

摘要

它是一种著名的药草,目前被用作治疗抑郁症的药物,因为它含有许多高水平的次生代谢产物。乙烯反应因子(ERF)家族编码具有多种功能的转录调节因子,这些调节因子在植物的各种发育和生理过程中起着至关重要的作用,它们可以通过调节基因表达来保护植物免受各种胁迫。尽管其他植物中几个基因的功能已得到进一步证实,但它是金虎尾目第一个测序的物种,迄今为止尚未有关于该物种的相关信息报道。在本研究中,从该物种中总共鉴定出101个ERF基因。利用该物种的基因组数据库对ERF家族进行了系统而全面的生物信息学分析。根据系统发育树分析,这些基因进一步分为11个亚家族。基因本体(GO)分析表明,大多数基因可能参与植物的生物学过程。顺式元件主要分为五类,与基因转录调控、对各种胁迫的响应以及植物发育相关。对表达模式的进一步分析表明,胁迫响应基因对不同处理有响应。这项工作利用该物种的基因组序列对其进行了系统分析。我们的结果为进一步研究该物种中与胁迫相关的ERF基因的功能提供了理论基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a3a1/7827068/cd40f25ffe09/plants-10-00133-g001.jpg

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