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引用本文的文献

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Identification of an Intrinsically Disordered Region (IDR) in Arginyltransferase 1 (ATE1).精氨酰转移酶1(ATE1)中内在无序区域(IDR)的鉴定。
Biochemistry. 2024 Dec 17;63(24):3236-3249. doi: 10.1021/acs.biochem.4c00512. Epub 2024 Dec 6.
2
Identification of an intrinsically disordered region (IDR) in arginyltransferase 1 (ATE1).精氨酰转移酶1(ATE1)中内在无序区域(IDR)的鉴定。
bioRxiv. 2024 Aug 24:2024.08.23.609426. doi: 10.1101/2024.08.23.609426.
3
tRNA binds TDP-43 RNA recognition motifs and ligand of Ate1 protein LIAT1.转运RNA(tRNA)结合TDP - 43 RNA识别基序和Ate1蛋白LIAT1的配体。
MicroPubl Biol. 2024 Jul 15;2024. doi: 10.17912/micropub.biology.001224. eCollection 2024.
4
Widespread hydroxylation of unstructured lysine-rich protein domains by JMJD6.JMJD6 对无规则结构富含赖氨酸的蛋白质结构域进行广泛羟化。
Proc Natl Acad Sci U S A. 2022 Aug 9;119(32):e2201483119. doi: 10.1073/pnas.2201483119. Epub 2022 Aug 5.
5
Role of the Epigenetic Modifier JMJD6 in Tumor Development and Regulation of Immune Response.表观遗传修饰因子 JMJD6 在肿瘤发生发展和免疫调节中的作用。
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本文引用的文献

1
Analyzing Protein Disorder with IUPred2A.用 IUPred2A 分析蛋白质无序性。
Curr Protoc Bioinformatics. 2020 Jun;70(1):e99. doi: 10.1002/cpbi.99.
2
Liquid-Liquid Phase Separation in Disease.液-液相分离在疾病中的作用
Annu Rev Genet. 2019 Dec 3;53:171-194. doi: 10.1146/annurev-genet-112618-043527. Epub 2019 Aug 20.
3
Lysine/RNA-interactions drive and regulate biomolecular condensation.赖氨酸/RNA 相互作用驱动和调节生物分子凝聚。
Nat Commun. 2019 Jul 2;10(1):2909. doi: 10.1038/s41467-019-10792-y.
4
Nucleolar Stress: hallmarks, sensing mechanism and diseases.核仁应激:特征、传感机制与疾病
Cell Stress. 2018 May 10;2(6):125-140. doi: 10.15698/cst2018.06.139.
5
Biochemical and structural investigations clarify the substrate selectivity of the 2-oxoglutarate oxygenase JMJD6.生化和结构研究阐明了 2-氧戊二酸加氧酶 JMJD6 的底物选择性。
J Biol Chem. 2019 Jul 26;294(30):11637-11652. doi: 10.1074/jbc.RA119.008693. Epub 2019 May 30.
6
Phase-to-Phase With Nucleoli - Stress Responses, Protein Aggregation and Novel Roles of RNA.核仁间的相态转换——应激反应、蛋白质聚集及RNA的新作用
Front Cell Neurosci. 2019 Apr 26;13:151. doi: 10.3389/fncel.2019.00151. eCollection 2019.
7
Membraneless nuclear organelles and the search for phases within phases.无膜核细胞器和相内相的寻找。
Wiley Interdiscip Rev RNA. 2019 Mar;10(2):e1514. doi: 10.1002/wrna.1514. Epub 2018 Oct 25.
8
JMJD6 Licenses ERα-Dependent Enhancer and Coding Gene Activation by Modulating the Recruitment of the CARM1/MED12 Co-activator Complex.JMJD6 通过调节 CARM1/MED12 共激活复合物的募集来激活 ERα 依赖性增强子和编码基因。
Mol Cell. 2018 Apr 19;70(2):340-357.e8. doi: 10.1016/j.molcel.2018.03.006. Epub 2018 Apr 5.
9
Self-interaction of NPM1 modulates multiple mechanisms of liquid-liquid phase separation.NPM1 的自我相互作用调节液-液相分离的多种机制。
Nat Commun. 2018 Feb 26;9(1):842. doi: 10.1038/s41467-018-03255-3.
10
Prediction of protein disorder based on IUPred.基于IUPred的蛋白质无序预测。
Protein Sci. 2018 Jan;27(1):331-340. doi: 10.1002/pro.3334. Epub 2017 Nov 16.

Ate1的配体本质上是无序的,并参与由含Jumonji结构域6调节的核仁相分离。

The Ligand of Ate1 is intrinsically disordered and participates in nucleolar phase separation regulated by Jumonji Domain Containing 6.

作者信息

Arva Akshaya, Kasu Yasar Arfat T, Duncan Jennifer, Alkhatatbeh Mosleh A, Brower Christopher S

机构信息

Department of Biology, Texas Woman's University, Denton, TX 76204.

Department of Biology, Texas Woman's University, Denton, TX 76204

出版信息

Proc Natl Acad Sci U S A. 2021 Jan 5;118(1). doi: 10.1073/pnas.2015887118. Epub 2020 Dec 21.

DOI:10.1073/pnas.2015887118
PMID:33443146
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7817205/
Abstract

The Ligand of Ate1 (Liat1) is a protein of unknown function that was originally discovered through its interaction with arginyl-tRNA protein transferase 1 (Ate1), a component of the Arg/N-degron pathway of protein degradation. Here, we characterized the functional domains of mouse Liat1 and found that its N-terminal half comprises an intrinsically disordered region (IDR) that facilitates its liquid-liquid phase separation (LLPS) in the nucleolus. Using bimolecular fluorescence complementation and immunocytochemistry, we found that Liat1 is targeted to the nucleolus by a low-complexity poly-K region within its IDR. We also found that the lysyl-hydroxylase activity of Jumonji Domain Containing 6 (Jmjd6) modifies Liat1, in a manner that requires the Liat1 poly-K region, and inhibits its nucleolar targeting and potential functions. In sum, this study reveals that Liat1 participates in nucleolar LLPS regulated by Jmjd6.

摘要

Ate1的配体(Liat1)是一种功能未知的蛋白质,最初是通过其与精氨酰-tRNA蛋白转移酶1(Ate1)的相互作用而被发现的,Ate1是蛋白质降解的Arg/N-降解途径的一个组成部分。在此,我们对小鼠Liat1的功能结构域进行了表征,发现其N端的一半包含一个内在无序区域(IDR),该区域促进其在核仁中的液-液相分离(LLPS)。使用双分子荧光互补和免疫细胞化学方法,我们发现Liat1通过其IDR内的一个低复杂性多聚K区域靶向核仁。我们还发现,含Jumonji结构域6(Jmjd6)的赖氨酰羟化酶活性以一种需要Liat1多聚K区域的方式修饰Liat1,并抑制其核仁靶向和潜在功能。总之,这项研究揭示了Liat1参与了由Jmjd6调节的核仁LLPS。