来自马斯贝格铜矿的生物膜的宏基因组组装基因组序列
Metagenome-Assembled Genome Sequences of a Biofilm Derived from Marsberg Copper Mine.
作者信息
Arif Sania, Nacke Heiko, Hoppert Michael
机构信息
Department of General Microbiology, Institute of Microbiology and Genetics, Georg-August-Universität, Göttingen, Germany
Department of Genomic and Applied Microbiology, Institute of Microbiology and Genetics, Georg-August University, Göttingen, Germany.
出版信息
Microbiol Resour Announc. 2021 Jan 14;10(2):e01253-20. doi: 10.1128/MRA.01253-20.
Abstract
We sequenced the metagenome of a biofilm collected near a leachate stream of the Marsberg copper mine (Germany) and reconstructed eight metagenome-assembled genomes. These genomes yield copper resistance through Cu(I) oxidation via multiple copper oxidases and extrusion through copper-exporting P-type ATPases.
摘要
我们对从德国马斯贝格铜矿渗滤液流附近采集的生物膜的宏基因组进行了测序，并重建了八个宏基因组组装基因组。这些基因组通过多种铜氧化酶将Cu(I)氧化并通过铜输出P型ATP酶进行外排，从而产生铜抗性。
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2
The MetaCyc database of metabolic pathways and enzymes - a 2019 update.代谢途径和酶的 MetaCyc 数据库——2019 年更新。
Nucleic Acids Res. 2020 Jan 8;48(D1):D445-D453. doi: 10.1093/nar/gkz862.
3
fastp: an ultra-fast all-in-one FASTQ preprocessor.fastp：一个超快速的一体化 FASTQ 预处理程序。
Bioinformatics. 2018 Sep 1;34(17):i884-i890. doi: 10.1093/bioinformatics/bty560.
4
metaSPAdes: a new versatile metagenomic assembler.metaSPAdes：一种新型通用宏基因组序列拼接软件
Genome Res. 2017 May;27(5):824-834. doi: 10.1101/gr.213959.116. Epub 2017 Mar 15.
5
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PLoS Pathog. 2016 Jan 7;12(1):e1005295. doi: 10.1371/journal.ppat.1005295. eCollection 2016 Jan.
6
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7
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8
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Prokka: rapid prokaryotic genome annotation.Prokka：快速的原核生物基因组注释。
Bioinformatics. 2014 Jul 15;30(14):2068-9. doi: 10.1093/bioinformatics/btu153. Epub 2014 Mar 18.
10
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Microbiol Mol Biol Rev. 2008 Sep;72(3):471-94. doi: 10.1128/MMBR.00008-08.
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