Lee Ji Hee, Jung Jong-Hyun, Kim Min-Kyu, Choe Han Na, Seong Chi Nam, Lim Sangyong
Radiation Research Division, Korea Atomic Energy Research Institute, Jeongeup, 56212, Republic of Korea.
Department of Radiation Science and Technology, University of Science and Technology, Daejeon, 34113, Republic of Korea.
Antonie Van Leeuwenhoek. 2021 Feb;114(2):151-159. doi: 10.1007/s10482-020-01508-0. Epub 2021 Jan 15.
An aerobic, Gram-negative, non-motile, non-spore-forming, rod-shaped, and pale yellow-colored bacterial strain, designated TS118, was isolated from a sand sample obtained from a coastal sand dune after exposure to 3 kGy of gamma radiation. Phylogenetic analysis based on 16S rRNA gene sequences revealed that the isolate was a member of the genus Spirosoma and most closely related to Spirosoma metallicum PR1014k (95.1% similarity). The genome of strain TS118 is constituted by one chromosome (5,691,492 bp) and one plasmid (28,440 bp) and has a G + C content of 52.7%. The genome contains 4641 protein coding sequences (CDSs), 38 tRNAs, and 11 rRNAs. The predominant fatty acids of strain TS118 were C ω5c, iso-C, C, summed feature 3 (C ω6c and/or C ω7c), and iso-C 3-OH. The major polar lipids were phosphatidylethanolamine, an unidentified amino lipid and an unidentified aminophospholipid. The main respiratory quinone was menaquinone-7 (MK-7). The novel strain showed resistance to gamma radiation with a D value (i.e., the dose required to reduce the bacterial population by tenfold) of 4.3 kGy. Based on the phylogenetic, physiological, and chemotaxonomic characteristics, strain TS118 represents a novel species, for which the name Spirosoma taeanense sp. nov. is proposed. The type strain is TS118 (=KCTC 72898 =JCM 34024).
从暴露于3千戈瑞伽马辐射后的沿海沙丘沙样中分离出一株需氧、革兰氏阴性、无运动性、不形成芽孢、杆状且呈浅黄色的细菌菌株,命名为TS118。基于16S rRNA基因序列的系统发育分析表明,该分离株是螺体菌属的成员,与金属螺体菌PR1014k最为接近(相似度为95.1%)。TS118菌株的基因组由一条染色体(5,691,492 bp)和一个质粒(28,440 bp)组成,G + C含量为52.7%。该基因组包含4641个蛋白质编码序列(CDS)、38个tRNA和11个rRNA。TS118菌株的主要脂肪酸为C ω5c、异C、C、总和特征3(C ω6c和/或C ω7c)以及异C 3-OH。主要极性脂为磷脂酰乙醇胺、一种未鉴定的氨基脂和一种未鉴定的氨基磷脂。主要呼吸醌为甲基萘醌-7(MK-7)。该新菌株对伽马辐射具有抗性,D值(即使细菌数量减少十倍所需的剂量)为4.3千戈瑞。基于系统发育、生理和化学分类学特征,TS118菌株代表一个新物种,为此提出名为泰安螺体菌(Spirosoma taeanense sp. nov.)。模式菌株为TS118(=KCTC 72898 =JCM 34024)。