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黄杆菌新种,一种来自济州岛土壤的新型细菌。

Spirosoma flavus sp. nov., a novel bacterium from soil of Jeju Island.

机构信息

College of Agricultural and Life Sciences, Kyungpook National University, Daegu, 41566, Republic of Korea.

Department of Horticultural Science, Kyungpook National University, Daegu, 41566, Republic of Korea.

出版信息

J Microbiol. 2017 Nov;55(11):850-855. doi: 10.1007/s12275-017-7360-0. Epub 2017 Oct 27.

DOI:10.1007/s12275-017-7360-0
PMID:29076067
Abstract

A novel, Gram-staining negative, yellow pigmented bacterial strain, designated 15J11-2, was isolated from soil sample on Jeju Island, Republic of Korea. The strain was subjected to a taxonomic study using a polyphasic approach. The strain was able to grow at temperature range from 10°C to 30°C, pH 7-8, and in presence of 0-1% (w/v) NaCl. Comparative 16S rRNA gene sequence analysis showed that strain 15J11-2 belongs to the genus Spirosoma and levels of 16S rRNA gene sequence similarity ranged from 91.5% to 89.8%. The genomic DNA G + C content of strain 15J11-2 was 46.0 mol%. The isolate contained phosphatidylethanolamine and an unidentified aminophospholipid as the main polar lipids, menaquinone MK-7 as the predominant respiratory quinone, and summed feature 3 (C ω6c/C ω7c; 39.4%), C ω5c (27.1%), and C (13.0%) as the major fatty acids, which supported the affiliation of strain 15J11-2 to the genus Spirosoma. The results of physiological and biochemical tests allowed genotypic and phenotypic differentiation of strain 15J11-2 from recognized Spirosoma species. On the basis of its phenotypic properties, genotypic distinctiveness, chemotaxonomic features, strain 15J11-2 represents a novel species of the genus Spirosoma, for which the name Spirosoma flavus sp. nov. is proposed. The type strain is 15J11-2 (= KCTC 52026 = JCM 31998).

摘要

一株新型革兰氏阴性、黄色素产生的细菌菌株,被命名为 15J11-2,从韩国济州岛的土壤样本中分离得到。该菌株通过多相分类研究进行了分类学研究。该菌株能够在 10°C 到 30°C 的温度范围内生长,pH 值为 7-8,并且能够在 0-1%(w/v)NaCl 的存在下生长。比较 16S rRNA 基因序列分析表明,菌株 15J11-2 属于 Spirosoma 属,16S rRNA 基因序列相似性水平为 91.5%-89.8%。菌株 15J11-2 的基因组 DNA G+C 含量为 46.0mol%。该分离株含有磷脂酰乙醇胺和一种未鉴定的氨基磷脂作为主要极性脂,menaquinone MK-7 作为主要呼吸醌,以及总和特征 3(C ω6c/C ω7c;39.4%)、C ω5c(27.1%)和 C(13.0%)作为主要脂肪酸,这支持了菌株 15J11-2 属于 Spirosoma 属。生理生化试验的结果允许从公认的 Spirosoma 种中对菌株 15J11-2 进行基因型和表型分化。基于其表型特性、基因型独特性、化学生态特征,菌株 15J11-2 代表了 Spirosoma 属的一个新型种,建议将其命名为 Spirosoma flavus sp. nov.。模式菌株为 15J11-2(=KCTC 52026=JCM 31998)。

相似文献

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J Microbiol. 2017 Nov;55(11):850-855. doi: 10.1007/s12275-017-7360-0. Epub 2017 Oct 27.
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本文引用的文献

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List of novel names and novel combinations previously effectively, but not validly, published.先前已有效但未有效发表的新名称和新组合列表。
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Spirosoma luteolum sp. nov. isolated from water.从水中分离出的新种黄螺菌。
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Spirosoma knui sp. nov., a radiation-resistant bacterium isolated from the Han River.克氏螺菌新种(Spirosoma knui sp. nov.),一种从汉江分离出的抗辐射细菌。
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Spirosoma lacussanchae sp. nov., a phosphate-solubilizing bacterium isolated from a freshwater reservoir.新种湖泊螺菌(Spirosoma lacussanchae sp. nov.),一种从淡水水库分离出的解磷细菌。
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Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies.推出 EzBioCloud:一个统一分类学的 16S rRNA 基因序列和全基因组组装数据库。
Int J Syst Evol Microbiol. 2017 May;67(5):1613-1617. doi: 10.1099/ijsem.0.001755. Epub 2017 May 30.
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Spirosoma swuense sp. nov., isolated from wet soil.斯氏螺菌新种,从潮湿土壤中分离得到。
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High quality draft genome sequence of the type strain of Pseudomonas lutea OK2(T), a phosphate-solubilizing rhizospheric bacterium.溶磷根际细菌淡黄假单胞菌OK2(T)模式菌株的高质量基因组草图序列
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Spirosoma aerophilum sp. nov., isolated from an air sample.嗜气螺菌新种,从空气样本中分离得到。
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MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets.MEGA7:适用于更大数据集的分子进化遗传学分析版本7.0
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