• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

表征生物分子凝聚物材料特性的方法。

Methods for characterizing the material properties of biomolecular condensates.

作者信息

Alshareedah Ibraheem, Kaur Taranpreet, Banerjee Priya R

机构信息

Department of Physics, University at Buffalo, Buffalo, NY, United States.

Department of Physics, University at Buffalo, Buffalo, NY, United States.

出版信息

Methods Enzymol. 2021;646:143-183. doi: 10.1016/bs.mie.2020.06.009. Epub 2020 Jul 22.

DOI:10.1016/bs.mie.2020.06.009
PMID:33453924
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7849318/
Abstract

Biomolecular condensates are membrane-less sub-cellular compartments that perform a plethora of important functions in signaling and storage. The material properties of biomolecular condensates such as viscosity, surface tension, viscoelasticity, and macromolecular diffusion play important roles in regulating their biological functions. Aberrations in these properties have been implicated in various neurodegenerative disorders and certain types of cancer. Unraveling the molecular driving forces that control the fluid structure and dynamics of biomolecular condensates across different length- and time-scales necessitates the application of innovative biophysical methodologies. In this chapter, we discuss major experimental techniques that are widely used to study the material states and dynamics of biomolecular condensates as well as their practical and conceptual limitations. We end this chapter with a discussion on more advanced tools that are currently emerging to address the complex fluid dynamics of these condensates.

摘要

生物分子凝聚物是无膜的亚细胞区室,在信号传导和储存中发挥着众多重要功能。生物分子凝聚物的材料特性,如粘度、表面张力、粘弹性和大分子扩散,在调节其生物学功能中起着重要作用。这些特性的异常与各种神经退行性疾病和某些类型的癌症有关。要揭示在不同长度和时间尺度上控制生物分子凝聚物流体结构和动力学的分子驱动力,需要应用创新的生物物理方法。在本章中,我们将讨论广泛用于研究生物分子凝聚物的材料状态和动力学的主要实验技术,以及它们在实际应用和概念上的局限性。本章最后将讨论目前正在出现的更先进的工具,以解决这些凝聚物复杂的流体动力学问题。

相似文献

1
Methods for characterizing the material properties of biomolecular condensates.表征生物分子凝聚物材料特性的方法。
Methods Enzymol. 2021;646:143-183. doi: 10.1016/bs.mie.2020.06.009. Epub 2020 Jul 22.
2
Time-Dependent Material Properties of Aging Biomolecular Condensates from Different Viscoelasticity Measurements in Molecular Dynamics Simulations.基于分子动力学模拟的不同粘弹性测量的老化生物分子凝聚物的时变材料特性。
J Phys Chem B. 2023 May 25;127(20):4441-4459. doi: 10.1021/acs.jpcb.3c01292. Epub 2023 May 17.
3
Quantifying surface tension and viscosity in biomolecular condensates by FRAP-ID.通过 FRAP-ID 定量生物分子凝聚物中的表面张力和粘度。
Biophys J. 2024 Oct 1;123(19):3366-3374. doi: 10.1016/j.bpj.2024.07.043. Epub 2024 Aug 8.
4
Determining Thermodynamic and Material Properties of Biomolecular Condensates by Confocal Microscopy and Optical Tweezers.利用共聚焦显微镜和光镊测定生物分子凝聚物的热力学和材料性质。
Methods Mol Biol. 2023;2563:237-260. doi: 10.1007/978-1-0716-2663-4_12.
5
Label-Free Techniques for Probing Biomolecular Condensates.无标记技术在探测生物分子凝聚物中的应用。
ACS Nano. 2024 Apr 23;18(16):10738-10757. doi: 10.1021/acsnano.4c01534. Epub 2024 Apr 12.
6
Determinants of viscoelasticity and flow activation energy in biomolecular condensates.生物分子凝聚物粘弹性和流动激活能的决定因素。
Sci Adv. 2024 Feb 16;10(7):eadi6539. doi: 10.1126/sciadv.adi6539.
7
RNA contributions to the form and function of biomolecular condensates.RNA 对生物分子凝聚物的形态和功能的贡献。
Nat Rev Mol Cell Biol. 2021 Mar;22(3):183-195. doi: 10.1038/s41580-020-0264-6. Epub 2020 Jul 6.
8
Measurement of Protein and Nucleic Acid Diffusion Coefficients Within Biomolecular Condensates Using In-Droplet Fluorescence Correlation Spectroscopy.利用液滴内荧光相关光谱法测量生物分子凝聚体内蛋白质和核酸扩散系数。
Methods Mol Biol. 2023;2563:199-213. doi: 10.1007/978-1-0716-2663-4_9.
9
Programmable viscoelasticity in protein-RNA condensates with disordered sticker-spacer polypeptides.具有无序黏附-间隔多肽的蛋白质-RNA 凝聚物中的可编程粘弹性。
Nat Commun. 2021 Nov 16;12(1):6620. doi: 10.1038/s41467-021-26733-7.
10
Mesoscale properties of biomolecular condensates emerging from protein chain dynamics.由蛋白质链动力学产生的生物分子凝聚物的中尺度特性。
ArXiv. 2025 Jan 8:arXiv:2407.19202v2.

引用本文的文献

1
Immiscible proteins compete for RNA binding to order condensate layers.互不相溶的蛋白质竞争RNA结合以排列凝聚层。
Proc Natl Acad Sci U S A. 2025 Aug 12;122(32):e2504778122. doi: 10.1073/pnas.2504778122. Epub 2025 Aug 6.
2
The rheology and interfacial properties of biomolecular condensates.生物分子凝聚物的流变学和界面性质
Biophys Rev. 2025 Jun 30;17(3):867-891. doi: 10.1007/s12551-025-01326-6. eCollection 2025 Jun.
3
Multivalency Controls the Growth and Dynamics of a Biomolecular Condensate.多价性控制生物分子凝聚物的生长和动态变化。

本文引用的文献

1
RNA-Induced Conformational Switching and Clustering of G3BP Drive Stress Granule Assembly by Condensation.RNA 诱导的构象转换和 G3BP 的聚集通过凝聚驱动应激颗粒的组装。
Cell. 2020 Apr 16;181(2):346-361.e17. doi: 10.1016/j.cell.2020.03.049.
2
Quantifying Dynamics in Phase-Separated Condensates Using Fluorescence Recovery after Photobleaching.使用光漂白后荧光恢复技术定量相分离凝聚物中的动力学。
Biophys J. 2019 Oct 1;117(7):1285-1300. doi: 10.1016/j.bpj.2019.08.030. Epub 2019 Aug 30.
3
Interplay between Short-Range Attraction and Long-Range Repulsion Controls Reentrant Liquid Condensation of Ribonucleoprotein-RNA Complexes.
J Am Chem Soc. 2025 Jul 23;147(29):25242-25253. doi: 10.1021/jacs.5c02947. Epub 2025 Jul 8.
4
Optogenetic storage and release of protein and mRNA in live cells and animals.活细胞和动物中蛋白质与信使核糖核酸的光遗传学存储与释放
Nat Commun. 2025 Jul 7;16(1):6230. doi: 10.1038/s41467-025-61322-y.
5
Material properties of biomolecular condensates emerge from nanoscale dynamics.生物分子凝聚物的材料特性源自纳米尺度动力学。
Proc Natl Acad Sci U S A. 2025 Jun 10;122(23):e2424135122. doi: 10.1073/pnas.2424135122. Epub 2025 Jun 2.
6
Micropipette aspiration reveals differential RNA-dependent viscoelasticity of nucleolar subcompartments.微量移液管抽吸法揭示了核仁亚区室不同的RNA依赖性粘弹性。
Proc Natl Acad Sci U S A. 2025 Jun 3;122(22):e2407423122. doi: 10.1073/pnas.2407423122. Epub 2025 May 28.
7
Single-fluorogen imaging reveals distinct environmental and structural features of biomolecular condensates.单荧光成像揭示了生物分子凝聚物独特的环境和结构特征。
Nat Phys. 2025;21(5):778-786. doi: 10.1038/s41567-025-02827-7. Epub 2025 Mar 14.
8
Protocols for monitoring condensate formation and dynamics between the phase-separating proteins SET/TAF-Iβ and cytochrome c.监测相分离蛋白SET/TAF-Iβ和细胞色素c之间冷凝物形成和动力学的实验方案。
STAR Protoc. 2025 May 6;6(2):103796. doi: 10.1016/j.xpro.2025.103796.
9
Mysteries of adenovirus packaging.腺病毒包装之谜。
J Virol. 2025 May 20;99(5):e0018025. doi: 10.1128/jvi.00180-25. Epub 2025 Apr 17.
10
Immiscible proteins compete for RNA binding to order condensate layers.互不相溶的蛋白质竞争与RNA结合以排列凝聚层。
bioRxiv. 2025 Mar 19:2025.03.18.644007. doi: 10.1101/2025.03.18.644007.
短程吸引和长程排斥相互作用控制核糖核蛋白 RNA 复合物的重入液相凝聚。
J Am Chem Soc. 2019 Sep 18;141(37):14593-14602. doi: 10.1021/jacs.9b03689. Epub 2019 Sep 5.
4
Divalent cations can control a switch-like behavior in heterotypic and homotypic RNA coacervates.二价阳离子可以控制异质和同质 RNA 凝聚物中的开关样行为。
Sci Rep. 2019 Aug 21;9(1):12161. doi: 10.1038/s41598-019-48457-x.
5
Spontaneous driving forces give rise to protein-RNA condensates with coexisting phases and complex material properties.自发驱动力导致具有共存相和复杂材料特性的蛋白质 - RNA 凝聚物的形成。
Proc Natl Acad Sci U S A. 2019 Apr 16;116(16):7889-7898. doi: 10.1073/pnas.1821038116. Epub 2019 Mar 29.
6
Molecular Crowding Tunes Material States of Ribonucleoprotein Condensates.分子拥挤调节核糖核蛋白凝聚物的物质状态。
Biomolecules. 2019 Feb 19;9(2):71. doi: 10.3390/biom9020071.
7
Mechanism of DNA-Induced Phase Separation for Transcriptional Repressor VRN1.DNA 诱导转录阻遏物 VRN1 相分离的机制。
Angew Chem Int Ed Engl. 2019 Apr 1;58(15):4858-4862. doi: 10.1002/anie.201810373. Epub 2019 Mar 12.
8
Salt-Dependent Rheology and Surface Tension of Protein Condensates Using Optical Traps.利用光阱研究蛋白质凝聚物的盐依赖性流变学和表面张力。
Phys Rev Lett. 2018 Dec 21;121(25):258101. doi: 10.1103/PhysRevLett.121.258101.
9
Methods and Strategies to Quantify Phase Separation of Disordered Proteins.量化无序蛋白质相分离的方法和策略
Methods Enzymol. 2018;611:31-50. doi: 10.1016/bs.mie.2018.09.037. Epub 2018 Nov 3.
10
Phase Separation in Biology and Disease.生物学与疾病中的相分离
J Mol Biol. 2018 Nov 2;430(23):4603-4606. doi: 10.1016/j.jmb.2018.09.006. Epub 2018 Sep 11.