Department of Physics, University at Buffalo, SUNY, NY 14260, USA.
Department of Pharmacology and Chemical Biology, Baylor College of Medicine, Houston, TX 77030, USA.
Biomolecules. 2019 Feb 19;9(2):71. doi: 10.3390/biom9020071.
Ribonucleoprotein (RNP) granules are membraneless liquid condensates that dynamically form,dissolve, and mature into a gel-like state in response to a changing cellular environment. RNP condensation islargely governed by promiscuous attractive inter-chain interactions mediated by low-complexity domains(LCDs). Using an archetypal disordered RNP, fused in sarcoma (FUS), here we study how molecular crowdingimpacts the RNP liquid condensation. We observe that the liquid⁻liquid coexistence boundary of FUS islowered by polymer crowders, consistent with an excluded volume model. With increasing bulk crowderconcentration, the RNP partition increases and the diffusion rate decreases in the condensed phase.Furthermore, we show that RNP condensates undergo substantial hardening wherein protein-dense dropletstransition from viscous fluid to viscoelastic gel-like states in a crowder concentration-dependent manner.Utilizing two distinct LCDs that broadly represent commonly occurring sequence motifs driving RNP phasetransitions, we reveal that the impact of crowding is largely independent of LCD charge and sequence patterns.These results are consistent with a thermodynamic model of crowder-mediated depletion interaction, whichsuggests that inter-RNP attraction is enhanced by molecular crowding. The depletion force is likely to play akey role in tuning the physical properties of RNP condensates within the crowded cellular space.
核糖核蛋白 (RNP) 颗粒是无膜的液态凝聚物,可动态形成、溶解,并在细胞环境变化时成熟为凝胶状。RNP 凝聚主要受由低复杂度结构域 (LCD) 介导的混杂吸引链间相互作用控制。在这里,我们使用典型的无序核糖核蛋白融合肉瘤蛋白 (FUS) 研究分子拥挤如何影响 RNP 液体凝聚。我们观察到聚合物拥挤剂降低了 FUS 的液⁻液相共存边界,这与排除体积模型一致。随着整体拥挤剂浓度的增加,凝聚相中的 RNP 分配增加,扩散率降低。此外,我们表明 RNP 凝聚物经历了显著的硬化,其中蛋白质密集的液滴从粘性流体转变为粘性弹性凝胶状状态,这与拥挤剂浓度有关。利用两种广泛代表驱动 RNP 相转变的常见序列基序的两个不同的 LCD,我们揭示了拥挤的影响在很大程度上独立于 LCD 的电荷和序列模式。这些结果与拥挤介导的耗竭相互作用的热力学模型一致,表明分子拥挤增强了 RNP 之间的吸引力。耗竭力可能在调节拥挤细胞空间内 RNP 凝聚物的物理性质方面发挥关键作用。