• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

分子拥挤调节核糖核蛋白凝聚物的物质状态。

Molecular Crowding Tunes Material States of Ribonucleoprotein Condensates.

机构信息

Department of Physics, University at Buffalo, SUNY, NY 14260, USA.

Department of Pharmacology and Chemical Biology, Baylor College of Medicine, Houston, TX 77030, USA.

出版信息

Biomolecules. 2019 Feb 19;9(2):71. doi: 10.3390/biom9020071.

DOI:10.3390/biom9020071
PMID:30791483
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6406554/
Abstract

Ribonucleoprotein (RNP) granules are membraneless liquid condensates that dynamically form,dissolve, and mature into a gel-like state in response to a changing cellular environment. RNP condensation islargely governed by promiscuous attractive inter-chain interactions mediated by low-complexity domains(LCDs). Using an archetypal disordered RNP, fused in sarcoma (FUS), here we study how molecular crowdingimpacts the RNP liquid condensation. We observe that the liquid⁻liquid coexistence boundary of FUS islowered by polymer crowders, consistent with an excluded volume model. With increasing bulk crowderconcentration, the RNP partition increases and the diffusion rate decreases in the condensed phase.Furthermore, we show that RNP condensates undergo substantial hardening wherein protein-dense dropletstransition from viscous fluid to viscoelastic gel-like states in a crowder concentration-dependent manner.Utilizing two distinct LCDs that broadly represent commonly occurring sequence motifs driving RNP phasetransitions, we reveal that the impact of crowding is largely independent of LCD charge and sequence patterns.These results are consistent with a thermodynamic model of crowder-mediated depletion interaction, whichsuggests that inter-RNP attraction is enhanced by molecular crowding. The depletion force is likely to play akey role in tuning the physical properties of RNP condensates within the crowded cellular space.

摘要

核糖核蛋白 (RNP) 颗粒是无膜的液态凝聚物,可动态形成、溶解,并在细胞环境变化时成熟为凝胶状。RNP 凝聚主要受由低复杂度结构域 (LCD) 介导的混杂吸引链间相互作用控制。在这里,我们使用典型的无序核糖核蛋白融合肉瘤蛋白 (FUS) 研究分子拥挤如何影响 RNP 液体凝聚。我们观察到聚合物拥挤剂降低了 FUS 的液⁻液相共存边界,这与排除体积模型一致。随着整体拥挤剂浓度的增加,凝聚相中的 RNP 分配增加,扩散率降低。此外,我们表明 RNP 凝聚物经历了显著的硬化,其中蛋白质密集的液滴从粘性流体转变为粘性弹性凝胶状状态,这与拥挤剂浓度有关。利用两种广泛代表驱动 RNP 相转变的常见序列基序的两个不同的 LCD,我们揭示了拥挤的影响在很大程度上独立于 LCD 的电荷和序列模式。这些结果与拥挤介导的耗竭相互作用的热力学模型一致,表明分子拥挤增强了 RNP 之间的吸引力。耗竭力可能在调节拥挤细胞空间内 RNP 凝聚物的物理性质方面发挥关键作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/585e/6406554/91f41ddadb27/biomolecules-09-00071-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/585e/6406554/0977c7cabd02/biomolecules-09-00071-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/585e/6406554/d8a6c10c1a50/biomolecules-09-00071-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/585e/6406554/5eedf916b82e/biomolecules-09-00071-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/585e/6406554/81d6dc78f7bc/biomolecules-09-00071-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/585e/6406554/4bebfb78e976/biomolecules-09-00071-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/585e/6406554/91f41ddadb27/biomolecules-09-00071-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/585e/6406554/0977c7cabd02/biomolecules-09-00071-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/585e/6406554/d8a6c10c1a50/biomolecules-09-00071-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/585e/6406554/5eedf916b82e/biomolecules-09-00071-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/585e/6406554/81d6dc78f7bc/biomolecules-09-00071-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/585e/6406554/4bebfb78e976/biomolecules-09-00071-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/585e/6406554/91f41ddadb27/biomolecules-09-00071-g006.jpg

相似文献

1
Molecular Crowding Tunes Material States of Ribonucleoprotein Condensates.分子拥挤调节核糖核蛋白凝聚物的物质状态。
Biomolecules. 2019 Feb 19;9(2):71. doi: 10.3390/biom9020071.
2
Interplay between Short-Range Attraction and Long-Range Repulsion Controls Reentrant Liquid Condensation of Ribonucleoprotein-RNA Complexes.短程吸引和长程排斥相互作用控制核糖核蛋白 RNA 复合物的重入液相凝聚。
J Am Chem Soc. 2019 Sep 18;141(37):14593-14602. doi: 10.1021/jacs.9b03689. Epub 2019 Sep 5.
3
Reentrant Phase Transition Drives Dynamic Substructure Formation in Ribonucleoprotein Droplets.重入相转变驱动核糖核蛋白液滴中的动态亚结构形成。
Angew Chem Int Ed Engl. 2017 Sep 11;56(38):11354-11359. doi: 10.1002/anie.201703191. Epub 2017 Jun 27.
4
Composition-dependent thermodynamics of intracellular phase separation.依赖于组成的细胞内相分离的热力学。
Nature. 2020 May;581(7807):209-214. doi: 10.1038/s41586-020-2256-2. Epub 2020 May 6.
5
More than a bystander: RNAs specify multifaceted behaviors of liquid-liquid phase-separated biomolecular condensates.不只是旁观者:RNA 为液-液相分离生物分子凝聚体的多方面行为提供了特异性。
Bioessays. 2024 Mar;46(3):e2300203. doi: 10.1002/bies.202300203. Epub 2024 Jan 4.
6
RNA Droplets.RNA 液滴。
Annu Rev Biophys. 2020 May 6;49:247-265. doi: 10.1146/annurev-biophys-052118-115508. Epub 2020 Feb 10.
7
Simulation of FUS Protein Condensates with an Adapted Coarse-Grained Model.模拟 FUS 蛋白凝聚物的改进粗粒化模型。
J Chem Theory Comput. 2021 Jan 12;17(1):525-537. doi: 10.1021/acs.jctc.0c01064. Epub 2020 Dec 13.
8
Liquid-Liquid Phase Separation in the Presence of Macromolecular Crowding and State-dependent Kinetics.在大分子拥挤和状态依赖动力学存在的情况下的液-液相分离。
Int J Mol Sci. 2021 Jun 22;22(13):6675. doi: 10.3390/ijms22136675.
9
What are the distinguishing features and size requirements of biomolecular condensates and their implications for RNA-containing condensates?生物分子凝聚物的特征和大小要求是什么,以及它们对含有 RNA 的凝聚物有什么影响?
RNA. 2022 Jan;28(1):36-47. doi: 10.1261/rna.079026.121. Epub 2021 Nov 12.
10
Friend or foe-Post-translational modifications as regulators of phase separation and RNP granule dynamics.友敌难分——翻译后修饰作为相分离和 RNP 颗粒动力学调节剂。
J Biol Chem. 2019 May 3;294(18):7137-7150. doi: 10.1074/jbc.TM118.001189. Epub 2018 Dec 26.

引用本文的文献

1
Crowding-induced collapse and adsorption of polymers with nonuniform bending stiffness.拥挤诱导的具有非均匀弯曲刚度的聚合物的塌缩与吸附
bioRxiv. 2025 Sep 6:2025.09.04.674235. doi: 10.1101/2025.09.04.674235.
2
Time-dependent catalytic activity in aging condensates.老化凝聚物中随时间变化的催化活性。
Nat Commun. 2025 Jul 29;16(1):6959. doi: 10.1038/s41467-025-62074-5.
3
The rheology and interfacial properties of biomolecular condensates.生物分子凝聚物的流变学和界面性质

本文引用的文献

1
A Chemical Chaperone Decouples TDP-43 Disordered Domain Phase Separation from Fibrillation.一种化学伴侣可使TDP-43无序结构域的相分离与纤维化解耦。
Biochemistry. 2018 Dec 18;57(50):6822-6826. doi: 10.1021/acs.biochem.8b01051. Epub 2018 Dec 10.
2
Optimal molecular crowding accelerates group II intron folding and maximizes catalysis.最佳分子拥挤加速了第二类内含子的折叠并最大化了催化效率。
Proc Natl Acad Sci U S A. 2018 Nov 20;115(47):11917-11922. doi: 10.1073/pnas.1806685115. Epub 2018 Nov 5.
3
Multiple Modes of Protein-Protein Interactions Promote RNP Granule Assembly.
Biophys Rev. 2025 Jun 30;17(3):867-891. doi: 10.1007/s12551-025-01326-6. eCollection 2025 Jun.
4
A coarse-grained model for disordered proteins under crowded conditions.一种用于拥挤条件下无序蛋白质的粗粒度模型。
Protein Sci. 2025 Aug;34(8):e70232. doi: 10.1002/pro.70232.
5
Decoupling Phase Separation and Fibrillization Preserves Activity of Biomolecular Condensates.解耦相分离和纤维化可保留生物分子凝聚物的活性。
Res Sq. 2025 Apr 29:rs.3.rs-6405673. doi: 10.21203/rs.3.rs-6405673/v1.
6
Nanoscale domains govern local diffusion and aging within FUS condensates.纳米级区域控制FUS凝聚物中的局部扩散和老化。
Res Sq. 2025 Apr 14:rs.3.rs-6406576. doi: 10.21203/rs.3.rs-6406576/v1.
7
Live-cell quantification reveals viscoelastic regulation of synapsin condensates by α-synuclein.活细胞定量分析揭示了α-突触核蛋白对突触素凝聚物的粘弹性调节。
Sci Adv. 2025 Apr 18;11(16):eads7627. doi: 10.1126/sciadv.ads7627.
8
Decoupling Phase Separation and Fibrillization Preserves Activity of Biomolecular Condensates.解耦相分离和纤维化可保留生物分子凝聚物的活性。
bioRxiv. 2025 Mar 19:2025.03.18.643977. doi: 10.1101/2025.03.18.643977.
9
Structural Characteristics and Properties of the RNA-Binding Protein hnRNPK at Multiple Physical States.RNA结合蛋白hnRNPK在多种物理状态下的结构特征与性质
Int J Mol Sci. 2025 Feb 5;26(3):1356. doi: 10.3390/ijms26031356.
10
The role of cytosine methylation in regulating the topology and liquid-liquid phase separation of DNA G-quadruplexes.胞嘧啶甲基化在调节DNA G-四链体的拓扑结构和液-液相分离中的作用。
Chem Sci. 2025 Jan 31;16(10):4213-4225. doi: 10.1039/d4sc06959e. eCollection 2025 Mar 5.
多种蛋白质-蛋白质相互作用促进 RNP 颗粒组装。
J Mol Biol. 2018 Nov 2;430(23):4636-4649. doi: 10.1016/j.jmb.2018.08.005. Epub 2018 Aug 9.
4
The molecular language of membraneless organelles.无膜细胞器的分子语言。
J Biol Chem. 2019 May 3;294(18):7115-7127. doi: 10.1074/jbc.TM118.001192. Epub 2018 Jul 25.
5
A Molecular Grammar Governing the Driving Forces for Phase Separation of Prion-like RNA Binding Proteins.一种分子语法,用于控制朊病毒样 RNA 结合蛋白相分离的驱动力。
Cell. 2018 Jul 26;174(3):688-699.e16. doi: 10.1016/j.cell.2018.06.006. Epub 2018 Jun 28.
6
Prion-like low-complexity sequences: Key regulators of protein solubility and phase behavior.类朊病毒低复杂度序列:调控蛋白可溶性和相行为的关键。
J Biol Chem. 2019 May 3;294(18):7128-7136. doi: 10.1074/jbc.TM118.001190. Epub 2018 Jun 19.
7
RNA buffers the phase separation behavior of prion-like RNA binding proteins.RNA 缓冲朊样 RNA 结合蛋白的液-液相分离行为。
Science. 2018 May 25;360(6391):918-921. doi: 10.1126/science.aar7366. Epub 2018 Apr 12.
8
Self-interaction of NPM1 modulates multiple mechanisms of liquid-liquid phase separation.NPM1 的自我相互作用调节液-液相分离的多种机制。
Nat Commun. 2018 Feb 26;9(1):842. doi: 10.1038/s41467-018-03255-3.
9
Intrinsically Disordered Regions Can Contribute Promiscuous Interactions to RNP Granule Assembly.无规卷曲区域可以为 RNP 颗粒组装贡献杂乱无章的相互作用。
Cell Rep. 2018 Feb 6;22(6):1401-1412. doi: 10.1016/j.celrep.2018.01.036.
10
Phase separation of a yeast prion protein promotes cellular fitness.酵母朊病毒蛋白的液-液相分离促进细胞适应度。
Science. 2018 Jan 5;359(6371). doi: 10.1126/science.aao5654.