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松球掌仙人掌亚种的叶绿体基因组，一种墨西哥濒危物种。

The chloroplast genome of the pincushion cactus subsp. , a Mexican endangered species.

作者信息

Hinojosa-Alvarez Silvia, Arias Salvador, Ferrand Sylvie, Purugganan Michael D, Rozas Julio, Rosas Ulises, Wegier Ana

机构信息

Jardín Botánico, Instituto de Biología, Universidad Nacional Autónoma de México, Coyoacán, México City, México.

Center for Genomics and Systems Biology, New York University Abu Dhabi Research Institute, Abu Dhabi, United Arab Emirates.

出版信息

Mitochondrial DNA B Resour. 2020 May 12;5(3):2038-2039. doi: 10.1080/23802359.2020.1757523.

DOI:10.1080/23802359.2020.1757523
PMID:33457733
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7782124/
Abstract

The genus occupies diverse habitats and exhibits diverse growth patterns and a large range of morphologies. Most of the species of this genus are used as ornamental plants and are subject to mass habitat loss. Due to these factors, they are being submitted to selective pressure that might affect conservational efforts and management plans. We obtained the 133 gene chloroplast genome as part of the project of sequencing the complete genome of pincushion cactus, including 88 protein-coding genes, 8 rRNA genes, and 37 tRNA genes. The phylogenetic tree indicates the pincushion cactus is a sister species of and .

摘要

该属植物占据多种生境，呈现出多样的生长模式和广泛的形态特征。该属的大多数物种被用作观赏植物，正面临大规模的栖息地丧失。由于这些因素，它们正受到可能影响保护工作和管理计划的选择压力。作为松球掌仙人掌全基因组测序项目的一部分，我们获得了包含133个基因的叶绿体基因组，其中包括88个蛋白质编码基因、8个rRNA基因和37个tRNA基因。系统发育树表明，松球掌仙人掌是[物种名1]和[物种名2]的姐妹物种。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4230/7782124/20ab451baaa7/TMDN_A_1757523_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4230/7782124/20ab451baaa7/TMDN_A_1757523_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4230/7782124/20ab451baaa7/TMDN_A_1757523_F0001_C.jpg

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引用本文的文献

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本文引用的文献

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Plants (Basel). 2019 Oct 1;8(10):392. doi: 10.3390/plants8100392.
2
MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization.MAFFT 在线服务：多序列比对、交互式序列选择和可视化。
Brief Bioinform. 2019 Jul 19;20(4):1160-1166. doi: 10.1093/bib/bbx108.
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GeSeq - versatile and accurate annotation of organelle genomes.
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Nucleic Acids Res. 2017 Jul 3;45(W1):W6-W11. doi: 10.1093/nar/gkx391.
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NOVOPlasty: de novo assembly of organelle genomes from whole genome data.NOVOPlasty：从头组装细胞器基因组的全基因组数据。
Nucleic Acids Res. 2017 Feb 28;45(4):e18. doi: 10.1093/nar/gkw955.
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IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies.IQ-TREE：一种用于估计最大似然系统发育树的快速且有效的随机算法。
Mol Biol Evol. 2015 Jan;32(1):268-74. doi: 10.1093/molbev/msu300. Epub 2014 Nov 3.
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Trimmomatic: a flexible trimmer for Illumina sequence data.Trimmomatic：一款适用于 Illumina 测序数据的灵活修剪工具。
Bioinformatics. 2014 Aug 1;30(15):2114-20. doi: 10.1093/bioinformatics/btu170. Epub 2014 Apr 1.