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一种极度濒危树种(龙脑香科)的完整叶绿体基因组。

The complete chloroplast genome of a critically endangered tree species, (Dipterocarpaceae).

作者信息

Ma Xiang, Cai Ying, Tang Liang

机构信息

Key Laboratory of Tropical Biological Resources of Ministry of Education, School of Life and Pharmaceutical Sciences, Hainan University, Haikou, China.

College of Ecology and Environment, Center for Terrestrial Biodiversity of the South China Sea, Hainan University, Haikou, China.

出版信息

Mitochondrial DNA B Resour. 2020 Oct 21;5(3):3575-3576. doi: 10.1080/23802359.2020.1829123.

DOI:10.1080/23802359.2020.1829123
PMID:33458242
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7782000/
Abstract

Tardieu is a critically endangered tree species distributed in limited regions in Thailand, Vietnam and Hainan Island of China. In this study, we reported the complete chloroplast genome sequence of . assembled from pair-end reads generated by Illumina sequencing. The circular chloroplast genome is 151,407 bp in length and comprises a large single copy region of 84,352 bp, a small single copy region of 19,733 bp, and a pair of inverted repeats of 23,661 bp each. The complete genome encodes 129 functional genes, including 83 protein-coding genes, 38 tRNA genes, and 8 rRNA genes. The overall GC content of the chloroplast genome was 37.4%. Phylogenetic analysis showed that . is sister to . with strong bootstrap support.

摘要

塔迪厄树是一种极度濒危的树种,分布于泰国、越南和中国海南岛的有限区域。在本研究中,我们报道了通过Illumina测序产生的双端读数组装的[物种名称未给出]的完整叶绿体基因组序列。环状叶绿体基因组长度为151,407 bp,包括一个84,352 bp的大单拷贝区域、一个19,733 bp的小单拷贝区域和一对各为23,661 bp的反向重复序列。完整基因组编码129个功能基因,包括83个蛋白质编码基因、38个tRNA基因和8个rRNA基因。叶绿体基因组的总体GC含量为37.4%。系统发育分析表明,[物种名称未给出]是[另一物种名称未给出]的姐妹种,自展支持率很高。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3c3f/7782000/3b27d2d25a7a/TMDN_A_1829123_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3c3f/7782000/3b27d2d25a7a/TMDN_A_1829123_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3c3f/7782000/3b27d2d25a7a/TMDN_A_1829123_F0001_B.jpg

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本文引用的文献

1
GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes.GetOrganelle:一个快速且通用的工具包,可用于准确从头组装细胞器基因组。
Genome Biol. 2020 Sep 10;21(1):241. doi: 10.1186/s13059-020-02154-5.
2
fastp: an ultra-fast all-in-one FASTQ preprocessor.fastp:一个超快速的一体化 FASTQ 预处理程序。
Bioinformatics. 2018 Sep 1;34(17):i884-i890. doi: 10.1093/bioinformatics/bty560.
3
ModelFinder: fast model selection for accurate phylogenetic estimates.ModelFinder:用于准确系统发育估计的快速模型选择
Nat Methods. 2017 Jun;14(6):587-589. doi: 10.1038/nmeth.4285. Epub 2017 May 8.
4
IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies.IQ-TREE:一种用于估计最大似然系统发育树的快速且有效的随机算法。
Mol Biol Evol. 2015 Jan;32(1):268-74. doi: 10.1093/molbev/msu300. Epub 2014 Nov 3.
5
MAFFT multiple sequence alignment software version 7: improvements in performance and usability.MAFFT 多序列比对软件版本 7:性能和易用性的改进。
Mol Biol Evol. 2013 Apr;30(4):772-80. doi: 10.1093/molbev/mst010. Epub 2013 Jan 16.
6
Automatic annotation of organellar genomes with DOGMA.使用DOGMA对细胞器基因组进行自动注释。
Bioinformatics. 2004 Nov 22;20(17):3252-5. doi: 10.1093/bioinformatics/bth352. Epub 2004 Jun 4.