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一种观赏草(禾本科:虎尾草亚科)的完整叶绿体基因组序列

Complete chloroplast genome sequence of an ornamental grass (Poaceae: Chloridoideae).

作者信息

Wang Qi

机构信息

Yunnan Forestry Technological College, Kunming, Yunnan, China.

出版信息

Mitochondrial DNA B Resour. 2020 May 13;5(3):2074-2075. doi: 10.1080/23802359.2020.1764403.

Abstract

(Lam.) Trin. is an ornamental grass belonging to the genus Schreb. in the family Poaceae. To better understand its phylogenetic relationship with respect to the other species in the tribe Chloridoideae, the first complete chloroplast genome of was determined. The complete chloroplast genome of is 134,907 bp in length, consisting of one large single-copy (LSC) region of 80,175 bp, one small single-copy (SSC) region of 12,706 bp, and a pair of inverted repeat (IR) regions of 21,013 bp. The overall GC content of the genome is 38.1%. Further, maximum likelihood phylogenetic analysis with TVM + F+R3 model was conducted using 28 complete plastomes of the Poaceae, which support close relationships among species of , Kunth, Raf., and Lag., followed by those of Haller.

摘要

(拉马克) Trin. 是一种属于禾本科 Schreb. 属的观赏草。为了更好地了解它与虎尾草亚科其他物种的系统发育关系,测定了其首个完整叶绿体基因组。该物种的完整叶绿体基因组长度为134,907 bp,由一个80,175 bp的大单拷贝(LSC)区域、一个12,706 bp的小单拷贝(SSC)区域和一对21,013 bp的反向重复(IR)区域组成。基因组的总体GC含量为38.1%。此外,使用禾本科的28个完整质体基因组,采用TVM + F + R3模型进行了最大似然系统发育分析,结果支持该物种与 Kunth、Raf. 和 Lag. 的物种之间关系密切,其次是与Haller的关系。

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