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中国广西一种珍稀特有草本植物的完整叶绿体基因组。

The complete chloroplast genome of , a rare and endemic herb in Guangxi, China.

作者信息

Qin Xin-Mei, Huang Zhang-Ping, Lu Yong-Bin, Zhang Qiang

机构信息

Guangxi Key Laboratory of Plant Conservation and Restoration Ecology in Karst Terrain, Guangxi Institute of Botany, Guangxi Zhuang Autonomous Region and Chinese Academy of Sciences, Guilin, China.

出版信息

Mitochondrial DNA B Resour. 2020 Jun 5;5(3):2324-2325. doi: 10.1080/23802359.2020.1773336.

DOI:10.1080/23802359.2020.1773336
PMID:33457776
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7781921/
Abstract

The complete chloroplast genome sequence of was assembled and the phylogenetic relationship with other species in Trib. Isopyreae was inferred in this study. The chloroplast genome is 164,047 bp in length. A typical quadripartite structure was detected, including two inverted repeats (IRs) of 29,581 bp, which are separated by a large single-copy (LSC) and a small single-copy (SSC) of 87,490 bp and 17,395 bp, respectively. Moreover, The genome comprises 132 genes, including 88 protein-coding genes, 36 tRNA genes, and 8 rRNA genes. The overall GC content of the chloroplast genome is 38.9%. The phylogenetic analysis indicated that . is most closely related to its congener . , and is most closely related to in Ranunculaceae.

摘要

本研究组装了[物种名称]的完整叶绿体基因组序列,并推断了其与毛茛科人字果族其他物种的系统发育关系。叶绿体基因组长度为164,047 bp。检测到典型的四分体结构,包括两个29,581 bp的反向重复序列(IRs),分别由87,490 bp的大单拷贝(LSC)和17,395 bp的小单拷贝(SSC)隔开。此外,该基因组包含132个基因,包括88个蛋白质编码基因、36个tRNA基因和8个rRNA基因。叶绿体基因组的总体GC含量为38.9%。系统发育分析表明,[物种名称]与其同属物种[另一物种名称]关系最为密切,并且在毛茛科中与[某物种名称]关系最为密切。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8a3b/7781921/babe56b80aa9/TMDN_A_1773336_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8a3b/7781921/babe56b80aa9/TMDN_A_1773336_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8a3b/7781921/babe56b80aa9/TMDN_A_1773336_F0001_B.jpg

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本文引用的文献

1
PGA: a software package for rapid, accurate, and flexible batch annotation of plastomes.PGA:一个用于叶绿体基因组快速、准确且灵活批量注释的软件包。
Plant Methods. 2019 May 21;15:50. doi: 10.1186/s13007-019-0435-7. eCollection 2019.
2
Chloroplast genomic data provide new and robust insights into the phylogeny and evolution of the Ranunculaceae.叶绿体基因组数据为毛茛科的系统发育和进化提供了新的、强有力的见解。
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(Ranunculaceae), a new species from the Republic of Korea.
毛茛科(Ranunculaceae),来自大韩民国的一个新物种。
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