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一种热带海参完整线粒体基因组的表征及系统发育分析

Characterization and phylogenetic analysis of the complete mitochondrial genome of a tropical sea cucumber, .

作者信息

Cheng Chuhang, Wu Feifei, Ren Chunhua, Jiang Xiao, Wu Xiaofen, Huang Wen, Hu Chaoqun

机构信息

CAS Key Laboratory of Tropical Marine Bio-resources and Ecology (LMB)/Guangdong Provincial Key Laboratory of Applied Marine Biology (LAMB), South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, China.

University of Chinese Academy of Sciences, Beijing, China.

出版信息

Mitochondrial DNA B Resour. 2020 Jul 6;5(3):2677-2678. doi: 10.1080/23802359.2020.1787264.

DOI:10.1080/23802359.2020.1787264
PMID:33457901
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7782842/
Abstract

In this study, the mitochondrial genome (mitogenome) of was unraveled to be 15,890 bp in length, containing 13 protein-coding genes (PCGs), 22 tRNA genes, and 2 rRNA genes. The PCGs were initiated by four initiation codons (ATG, TAC, ATC, and ATA). Only one PCG () and five tRNA genes ( , , , and ) were encoded on the light chain, and the other genes were encoded on the heavy chain. A phylogenetic tree constructed with 16S rRNA sequences showed that is most closely related to .

摘要

在本研究中,[物种名称]的线粒体基因组(mitogenome)被解析出长度为15,890 bp,包含13个蛋白质编码基因(PCGs)、22个tRNA基因和2个rRNA基因。这些蛋白质编码基因由四个起始密码子(ATG、TAC、ATC和ATA)起始。只有一个蛋白质编码基因([具体基因名称])和五个tRNA基因([具体基因名称1]、[具体基因名称2]、[具体基因名称3]、[具体基因名称4]和[具体基因名称5])在轻链上编码,其他基因在重链上编码。用16S rRNA序列构建的系统发育树表明,[物种名称]与[另一物种名称]关系最为密切。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3308/7782842/1bcfaf4fd425/TMDN_A_1787264_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3308/7782842/1bcfaf4fd425/TMDN_A_1787264_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3308/7782842/1bcfaf4fd425/TMDN_A_1787264_F0001_B.jpg

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本文引用的文献

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The complete mitochondrial genome of Damora sagana and phylogenetic analyses of the family Nymphalidae.萨加纳黛眼蝶的完整线粒体基因组及蛱蝶科系统发育分析
Genes Genomics. 2018 Jan;40(1):109-122. doi: 10.1007/s13258-017-0614-8. Epub 2017 Oct 17.
2
Molecular taxonomy, phylogeny and evolution in the family Stichopodidae (Aspidochirotida: Holothuroidea) based on COI and 16S mitochondrial DNA.基于 COI 和 16S 线粒体 DNA 的锚参科(Aspidochirotida:海参纲)分子分类学、系统发育和进化。
Mol Phylogenet Evol. 2010 Sep;56(3):1068-81. doi: 10.1016/j.ympev.2010.04.013. Epub 2010 Apr 23.
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Molecular phylogeny of coral-reef sea cucumbers (Holothuriidae: Aspidochirotida) based on 16S mitochondrial ribosomal DNA sequence.
基于线粒体16S核糖体DNA序列的珊瑚礁海参(海参科:盾手目)分子系统发育研究
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