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来自黄海的(鲈形目:带鱼科)的完整线粒体基因组。

The complete mitogenome of the (Perciformes: Trichiuridae) from the Yellow Sea.

作者信息

Cai Chuangeng, Song Na, Zhao Linlin, Gao Tianxiang

机构信息

Fisheries College, Ocean University of China, Qingdao, China.

First Institute of Oceanography, Ministry of Natural Resources, Qingdao, China.

出版信息

Mitochondrial DNA B Resour. 2020 Jul 15;5(3):2815-2816. doi: 10.1080/23802359.2020.1789512.

DOI:10.1080/23802359.2020.1789512
PMID:33457959
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7782197/
Abstract

is a commercially important marine fish belonging to the family Trichiuridae, with a wide distribution in the Indian-Western Pacific coastal waters. In this study, the complete mitochondrial genome of has been determined by primer walking methods. The mitogenome is 17,146 bp in length containing 13 protein-coding genes, 2 ribosomal RNA genes, 21 transfer RNA genes, a control region, and an origin of light-chain replication region. The base composition is 28.9% for A, 29.0% for C, 15.7% for G, and 26.4% for T. The maximum-likelihood tree based on whole mitogenome showed that it is the closest related species of

摘要

是一种具有商业重要性的海洋鱼类,属于带鱼科,在印度洋 - 西太平洋沿海水域广泛分布。在本研究中,已通过引物步移法确定了其完整的线粒体基因组。该线粒体基因组长度为17,146 bp,包含13个蛋白质编码基因、2个核糖体RNA基因、21个转移RNA基因、一个控制区和一个轻链复制起始区。碱基组成为:A占28.9%,C占29.0%,G占15.7%,T占26.4%。基于整个线粒体基因组构建的最大似然树表明,它是 的最密切相关物种。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/49c0/7782197/d5d5bf5a9ecb/TMDN_A_1789512_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/49c0/7782197/d5d5bf5a9ecb/TMDN_A_1789512_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/49c0/7782197/d5d5bf5a9ecb/TMDN_A_1789512_F0001_B.jpg

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本文引用的文献

1
tRNAscan-SE On-line: integrating search and context for analysis of transfer RNA genes.tRNAscan-SE在线工具:整合搜索与上下文以分析转运RNA基因
Nucleic Acids Res. 2016 Jul 8;44(W1):W54-7. doi: 10.1093/nar/gkw413. Epub 2016 May 12.
2
MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets.MEGA7:适用于更大数据集的分子进化遗传学分析版本7.0
Mol Biol Evol. 2016 Jul;33(7):1870-4. doi: 10.1093/molbev/msw054. Epub 2016 Mar 22.
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The complete mitochondrial genome sequence of Trichiurus nanhaiensis (Perciformes: Trichiuridae).
南海带鱼(鲈形目:带鱼科)的线粒体全基因组序列
Mitochondrial DNA. 2013 Oct;24(5):516-7. doi: 10.3109/19401736.2013.772151. Epub 2013 Mar 4.
4
The complete mitochondrial genome sequence of the cutlassfish Trichiurus japonicus (Perciformes: Trichiuridae): Genome characterization and phylogenetic considerations.日本带鱼(鲈形目:带鱼科)线粒体全基因组序列:基因组特征及系统发育分析
Mar Genomics. 2009 Jun;2(2):133-42. doi: 10.1016/j.margen.2009.07.003. Epub 2009 Aug 26.
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Pleistocene isolation in the Northwestern Pacific marginal seas and limited dispersal in a marine fish, Chelon haematocheilus (Temminck & Schlegel, 1845).西北太平洋边缘海的更新世隔离与一种海鱼——黑背黄鳍鲷(Chelon haematocheilus,特明克和施莱格尔,1845年)的有限扩散
Mol Ecol. 2007 Jan;16(2):275-88. doi: 10.1111/j.1365-294X.2006.03140.x.