无患子科某种亚种的完整叶绿体基因组序列。
Complete chloroplast genome sequence of subsp. (Sapindaceae).
作者信息
Zhang Wei, Xia Xinhe, Chen Difei, Li Jiayong, He Wei, Ma Wenbao, Wu Bixian, Zheng Yongqi, Zhang Chuanhong
机构信息
State Key Laboratory of Tree Genetics and Breeding, Laboratory of Forest Silviculture and Tree Cultivation, Research Institute of Forestry, Chinese Academy of Forestry, Beijing, P. R. China.
Sichuan Academy of Forestry, Chengdu, P. R. China.
出版信息
Mitochondrial DNA B Resour. 2020 Jul 20;5(3):2886-2887. doi: 10.1080/23802359.2020.1791002.
subsp. (Sapindaceae: ) is an endangered deciduous arbor species and endemic to China. Being obtained by using genome Illumina pair-end sequencing data, the complete chloroplast genome of subsp. had a typical quadripartite structure, with 156,063 bp long, including a large single-copy (LSC) region of 85,772 bp, a small single-copy (SSC) region of 18,117 bp, and a pair of inverted repeats (IRs) (each 26,087 bp in length). A total of 136 genes were annotated, of which 113 are unique genes, including 30 tRNAs, 4 rRNAs, and 79 protein-coding genes. The overall GC content was 37.9%. The phylogenetic analysis suggested that subsp. was the most closely related to and The complete chloroplast genome of subsp. is valuable for assessment and conservation of genetic resources and further for phylogenetic study of L.
亚种（无患子科：）是一种濒危落叶乔木物种，为中国特有。利用基因组Illumina双末端测序数据获得的亚种的完整叶绿体基因组具有典型的四分体结构，长度为156,063 bp，包括一个85,772 bp的大单拷贝（LSC）区域、一个18,117 bp的小单拷贝（SSC）区域和一对反向重复序列（IRs）（每个长度为26,087 bp）。总共注释了136个基因，其中113个是独特基因，包括30个tRNA、4个rRNA和79个蛋白质编码基因。总体GC含量为37.9%。系统发育分析表明，亚种与和关系最为密切。亚种的完整叶绿体基因组对于遗传资源的评估和保护以及进一步对L.的系统发育研究具有重要价值。
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