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瑞香科植物f的完整叶绿体基因组序列。

The complete chloroplast genome sequence of f (Thymelaeaceae).

作者信息

Liang Chengbo, Xie Jiuxiang, Yan Jingyan

机构信息

College of Agriculture and Animal Husbandry, Qinghai University, Xining, China.

State Key Laboratory of Plateau Ecology and Agriculture, Qinghai University, Xining, China.

出版信息

Mitochondrial DNA B Resour. 2020 Sep 1;5(3):3251-3252. doi: 10.1080/23802359.2020.1810166.

DOI:10.1080/23802359.2020.1810166
PMID:33458128
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7782256/
Abstract

L. f. S. C. Huang is a toxic perennial herb of Thymelaeaceae and has the potential for medicine as L. Here, we present the complete chloroplast genome sequence of f. based on Illumina sequencing data. The complete chloroplast genome sequence is 173,364 bp in size and contains four subregions: a pair of inverted repeats (IRs, each for 41,978 bp), a large single-copy region (LSC, 86,558 bp), and a small single-copy region (SSC, 2,850 bp). 141 genes were recognized in the assembled sequence: 93 protein-coding genes (PCGs), 38 tRNAs, 8 rRNAs, and 2 pseudo genes. The phylogenetic analysis result strongly supported that f. was closely related to L.

摘要

黄花瑞香狼毒是瑞香科有毒多年生草本植物,与瑞香属植物一样具有药用潜力。在此,我们基于Illumina测序数据展示了黄花瑞香狼毒的完整叶绿体基因组序列。完整叶绿体基因组序列大小为173,364 bp,包含四个亚区:一对反向重复序列(IRs,各为41,978 bp)、一个大单拷贝区域(LSC,86,558 bp)和一个小单拷贝区域(SSC,2,850 bp)。在组装序列中识别出141个基因:93个蛋白质编码基因(PCGs)、38个tRNA、8个rRNA和2个假基因。系统发育分析结果有力支持黄花瑞香狼毒与瑞香属植物密切相关。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/53ac/7782256/c43e97033a40/TMDN_A_1810166_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/53ac/7782256/c43e97033a40/TMDN_A_1810166_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/53ac/7782256/c43e97033a40/TMDN_A_1810166_F0001_B.jpg

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本文引用的文献

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MAFFT multiple sequence alignment software version 7: improvements in performance and usability.MAFFT 多序列比对软件版本 7:性能和易用性的改进。
Mol Biol Evol. 2013 Apr;30(4):772-80. doi: 10.1093/molbev/mst010. Epub 2013 Jan 16.
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SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.
瑞香科[某种植物]变种的完整叶绿体基因组。
Mitochondrial DNA B Resour. 2023 Feb 25;8(2):305-309. doi: 10.1080/23802359.2023.2179356. eCollection 2023.
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J Comput Biol. 2012 May;19(5):455-77. doi: 10.1089/cmb.2012.0021. Epub 2012 Apr 16.
4
[Pharmacognostical studies on the roots of Stellera chamaejasme and S. chamaejasme f. chrysantha].
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