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一种药用植物(瑞香科)叶绿体全基因组的特征分析

Characterization of the complete chloroplast genome of a medicinal plant, (Thymelaeaceae).

作者信息

Qian Shao-Juan, Zhang Yong-Hong

机构信息

School of Life Sciences, Yunnan Normal University, Kunming, China.

出版信息

Mitochondrial DNA B Resour. 2019 Dec 12;5(1):83-84. doi: 10.1080/23802359.2019.1696249.

DOI:10.1080/23802359.2019.1696249
PMID:33366433
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7720964/
Abstract

The complete chloroplast genome of , a medicinal plant with a variety of medicinal functions in treatment for arthritis, whooping cough, cancer, and bacillosis, was generated by de novo assembly using whole genome next-generation sequencing. The plastome was a quadripartite circular with 151,731 bp in length; containing a large single-copy (LSC) region of 86,523 bp and a small single-copy (SSC) region of 12,384 bp; separated by 2 inverted repeat (IR) regions of 26,403 bp each. The chloroplast genome contained 124 genes, including 79 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. The GC content in the whole cp genome, LSC region, SSC region, and IR region were 37.4, 34.9, 32.4, and 42.6%, respectively. The phylogenetic tree indicated that has a close relationship with with 100% support.

摘要

通过全基因组二代测序从头组装,获得了一种在治疗关节炎、百日咳、癌症和杆菌病方面具有多种药用功能的药用植物的完整叶绿体基因组。该质体基因组是一个四分体环状结构,长度为151,731 bp;包含一个86,523 bp的大单拷贝(LSC)区域和一个12,384 bp的小单拷贝(SSC)区域;由两个各为26,403 bp的反向重复(IR)区域隔开。叶绿体基因组包含124个基因,包括79个蛋白质编码基因、37个tRNA基因和8个rRNA基因。整个叶绿体基因组、LSC区域、SSC区域和IR区域的GC含量分别为37.4%、34.9%、32.4%和42.6%。系统发育树表明,[具体植物名称1]与[具体植物名称2]关系密切,支持率为100%。

注

原文中部分植物名称缺失,翻译时用[具体植物名称1]、[具体植物名称2]表示。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e483/7720964/a8ce6522dcfe/TMDN_A_1696249_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e483/7720964/a8ce6522dcfe/TMDN_A_1696249_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e483/7720964/a8ce6522dcfe/TMDN_A_1696249_F0001_B.jpg

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