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韩国濒危植物松叶菊(松叶菊属,菊科)的完整叶绿体基因组序列

The complete chloroplast genome sequence of (Matsum. ex Matsum.) Tzvelev (Asteraceae), endangered plant of Korea.

作者信息

Kim Hyoung Tae, Kim Jung Sung

机构信息

Institute of Agriculture Science and Technology, Chungbuk National University, Cheongju, Republic of Korea.

Department of Forest Science, Chungbuk National University, Cheongju,Republic of Korea.

出版信息

Mitochondrial DNA B Resour. 2020 Sep 17;5(3):3360-3362. doi: 10.1080/23802359.2020.1821819.

Abstract

The complete chloroplast (cp) genome sequence of was newly analyzed in this study. It was 151,395 bp in length and was a typical circular structure composed of a large single-copy region (LSC) (83,080 bp) and a small single-copy (SSC) region (18,391 bp) which were separated by two inverted repeat regions (24,962 bp). It was totally 6 bp shorter than the Chinese cp genome and was composed of 132 genes. There were four regional specific Indels between them in the LSC region as well as 20 bp insertion in the intergenic spacer region excluding poly-A/T sequence variation. And it was clear that both of were sister to - groups and their phylogenetic relationship from this study.

摘要

本研究新分析了[物种名称]的完整叶绿体(cp)基因组序列。其长度为151,395 bp,是典型的环状结构,由一个大单拷贝区域(LSC)(83,080 bp)和一个小单拷贝(SSC)区域(18,391 bp)组成,这两个区域被两个反向重复区域(24,962 bp)隔开。它比中国[另一物种名称]的cp基因组总共短6 bp,由132个基因组成。它们在LSC区域有四个区域特异性插入缺失,以及在基因间隔区有20 bp插入(不包括多聚A/T序列变异)。并且从本研究可以清楚地看出,两者都是[相关物种组名称]组的姐妹种,以及它们之间的系统发育关系。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/62f2/7781948/cda91e4f95ae/TMDN_A_1821819_F0001_B.jpg

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