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通过长读测序确定的叶绿体基因组完整序列。

Complete sequence of the chloroplast genome determined by long-read sequencing.

作者信息

Natsume Hiroki, Kusaba Makoto

机构信息

Graduate School of Integrated Sciences for Life, Hiroshima University, Higashi-Hiroshima, Japan.

出版信息

Mitochondrial DNA B Resour. 2025 Jul 23;10(8):753-757. doi: 10.1080/23802359.2025.2535628. eCollection 2025.

Abstract

species, commonly referred to as yarrow, belong to the family Asteraceae and are typically perennial, outbreeding plants used in traditional medicine. The genus has undergone hybridization and polyploidization events, resulting in phylogenetically complex relationships. Considering the limited scope of genomic studies on this genus, a genomic analysis of a diploid species is important for advancing our understanding of its evolutionary biology and genetic diversity. In this study, we assembled the complete chloroplast genome sequence of a diploid species () using nanopore long-read sequencing technology. The assembled chloroplast genome (149,252 bp), with a GC content of 38%, was revealed to include a large single-copy region (82,498 bp), a small single-copy region (18,458 bp), and two inverted repeat regions (24,148 bp each). The genome contains 89 protein-coding genes, 8 rRNAs, and 37 tRNAs. A phylogenetic analysis clustered with other species ( and ), positioning them within the same clade as the genus . The accuracy of nanopore sequencing was validated by comparing the results for 10 chloroplast genes with the corresponding Sanger sequencing results. Our findings provide valuable genetic resources for further taxonomic, evolutionary, and phylogenetic studies of the genus .

摘要

该属植物,通常被称为欧蓍草,属于菊科,是传统医学中常用的多年生、异花授粉植物。该属经历了杂交和多倍体化事件,导致系统发育关系复杂。鉴于对该属的基因组研究范围有限,对二倍体该属物种进行基因组分析对于增进我们对其进化生物学和遗传多样性的理解至关重要。在本研究中,我们使用纳米孔长读长测序技术组装了二倍体该属物种()的完整叶绿体基因组序列。组装得到的叶绿体基因组(149,252 bp),GC含量为38%,包括一个大单拷贝区域(82,498 bp)、一个小单拷贝区域(18,458 bp)和两个反向重复区域(各24,148 bp)。该基因组包含89个蛋白质编码基因、8个rRNA和37个tRNA。系统发育分析将该物种与其他该属物种(和)聚类在一起,将它们置于与该属相同的进化枝内。通过将10个叶绿体基因的结果与相应的桑格测序结果进行比较,验证了纳米孔测序的准确性。我们的研究结果为该属进一步的分类学、进化和系统发育研究提供了有价值的遗传资源。

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