• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

一种药用兰花物种(兰科)的完整叶绿体基因组序列

The complete chloroplast genome sequence of a medicinal orchid species (Orchidaceae).

作者信息

Yue Ziyang, Kao Huixia, Zhang Yu, Wang Tiemei, Dong Shubin, Cheng Jin

机构信息

College of Biological Sciences and Technology, National Engineering Laboratory for Tree Breeding, Beijing Forestry University, Beijing, China.

Beijing Botanical Garden, Beijing Floriculture Engineering Technology Research Centre, Beijing Laboratory of Urban and Rural Ecological Environment, Beijing, China.

出版信息

Mitochondrial DNA B Resour. 2020 Sep 29;5(3):3440-3442. doi: 10.1080/23802359.2020.1823264.

DOI:10.1080/23802359.2020.1823264
PMID:33458197
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7782944/
Abstract

is an important orchid species with high medicinal value. Its complete chloroplast genome is 158,935 bp in length, which possesses the typical structure consising of a small single-copy region (SSC) of 18,743 bp, two inverted repeats (IRs) of 26,374 bp, and a large-single copy region (LSC) of 87,444 bp. The genome encodes 137 genes, including 91 protein-coding genes (PCGs), 38 tRNA genes and 8 rRNA genes. And the overall GC content is 37.40%. In addition, our phylogenetic analysis based on cp genome revealed the phylogenetic relationship between and other 22 species in Orchidaceae.

摘要

是一种具有重要药用价值的兰花物种。其完整的叶绿体基因组长度为158,935 bp,具有典型结构,由一个18,743 bp的小单拷贝区域(SSC)、两个26,374 bp的反向重复序列(IRs)和一个87,444 bp的大单拷贝区域(LSC)组成。该基因组编码137个基因,包括91个蛋白质编码基因(PCGs)、38个tRNA基因和8个rRNA基因。总体GC含量为37.40%。此外,我们基于叶绿体基因组的系统发育分析揭示了该物种与兰科其他22个物种之间的系统发育关系。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5288/7782944/cbd50c4d7f62/TMDN_A_1823264_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5288/7782944/cbd50c4d7f62/TMDN_A_1823264_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5288/7782944/cbd50c4d7f62/TMDN_A_1823264_F0001_C.jpg

相似文献

1
The complete chloroplast genome sequence of a medicinal orchid species (Orchidaceae).一种药用兰花物种(兰科)的完整叶绿体基因组序列
Mitochondrial DNA B Resour. 2020 Sep 29;5(3):3440-3442. doi: 10.1080/23802359.2020.1823264.
2
Characterization of the complete chloroplast genome of (Orchidaceae).(兰科)叶绿体全基因组的特征分析
Mitochondrial DNA B Resour. 2020 Oct 7;5(3):3507-3509. doi: 10.1080/23802359.2020.1827058.
3
The complete chloroplast genome of (Orchidaceae), a rare and ornamental orchid.一种珍稀观赏兰花(兰科)的完整叶绿体基因组
Mitochondrial DNA B Resour. 2020 Nov 13;5(3):3746-3747. doi: 10.1080/23802359.2020.1835569.
4
Chloroplast Genome Analysis of Two Medicinal spp. (Orchidaceae) Shed Light on the Genetic Information, Comparative Genomics, and Species Identification.两种兰科药用植物的叶绿体基因组分析为遗传信息、比较基因组学和物种鉴定提供了线索。
Plants (Basel). 2020 Oct 9;9(10):1332. doi: 10.3390/plants9101332.
5
The complete chloroplast genome sequences of a highly Endangered orchid species (Orchidaceae).一种极度濒危兰花物种(兰科)的完整叶绿体基因组序列
Mitochondrial DNA B Resour. 2019 Sep 5;4(2):2928-2929. doi: 10.1080/23802359.2019.1660269.
6
The complete chloroplast genome sequence of the endemic and rare orchid (Orchidaceae) in China.中国特有珍稀兰花(兰科)的完整叶绿体基因组序列
Mitochondrial DNA B Resour. 2021 Sep 13;6(10):2931-2932. doi: 10.1080/23802359.2021.1972867. eCollection 2021.
7
The complete chloroplast genome sequences of an endangered orchid species (Orchidaceae).一种濒危兰花物种(兰科)的完整叶绿体基因组序列
Mitochondrial DNA B Resour. 2021 Jul 28;6(9):2521-2522. doi: 10.1080/23802359.2021.1959437. eCollection 2021.
8
The complete chloroplast genome of an ornamental orchid, (Orchidaceae).一种观赏兰花(兰科)的完整叶绿体基因组。
Mitochondrial DNA B Resour. 2020 Jan 10;5(1):465-467. doi: 10.1080/23802359.2019.1704195.
9
Characterization of the complete chloroplast genome of (Orchidaceae, Epidendroideae), a beautiful epiphytic orchid from China.中国一种美丽的附生兰花——(兰科,附生兰亚科)叶绿体全基因组的特征分析
Mitochondrial DNA B Resour. 2024 Jan 11;9(1):100-103. doi: 10.1080/23802359.2023.2301033. eCollection 2024.
10
The complete chloroplast genome of Anoectochilus roxburghii.金线莲的完整叶绿体基因组。
Mitochondrial DNA A DNA Mapp Seq Anal. 2016 Nov;27(6):4264-4265. doi: 10.3109/19401736.2015.1053131. Epub 2016 May 20.

引用本文的文献

1
In-depth analysis of genomes and functional genomics of orchid using cutting-edge high-throughput sequencing.利用前沿的高通量测序技术对兰花基因组和功能基因组进行深入分析。
Front Plant Sci. 2022 Sep 23;13:1018029. doi: 10.3389/fpls.2022.1018029. eCollection 2022.

本文引用的文献

1
PGA: a software package for rapid, accurate, and flexible batch annotation of plastomes.PGA:一个用于叶绿体基因组快速、准确且灵活批量注释的软件包。
Plant Methods. 2019 May 21;15:50. doi: 10.1186/s13007-019-0435-7. eCollection 2019.
2
[DNA barcoding identification of endangered medicinal plants of Orchidaceae].[兰科濒危药用植物的DNA条形码鉴定]
Zhongguo Zhong Yao Za Zhi. 2017 Jun;42(11):2058-2067. doi: 10.19540/j.cnki.cjcmm.2017.0090.
3
Orchid phylogenomics and multiple drivers of their extraordinary diversification.兰花系统发育基因组学及其非凡多样化的多种驱动因素。
Proc Biol Sci. 2015 Sep 7;282(1814). doi: 10.1098/rspb.2015.1553.
4
Phylogenetic relationships in Epidendroideae (Orchidaceae), one of the great flowering plant radiations: progressive specialization and diversification.附生兰亚科(兰科)的系统发育关系,其为开花植物的主要辐射类群之一:渐进式特化与多样化
Ann Bot. 2015 Mar;115(4):665-81. doi: 10.1093/aob/mcu253. Epub 2015 Jan 11.
5
MAFFT multiple sequence alignment software version 7: improvements in performance and usability.MAFFT 多序列比对软件版本 7:性能和易用性的改进。
Mol Biol Evol. 2013 Apr;30(4):772-80. doi: 10.1093/molbev/mst010. Epub 2013 Jan 16.
6
Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees.人类和黑猩猩线粒体DNA控制区域核苷酸替换数目的估计。
Mol Biol Evol. 1993 May;10(3):512-26. doi: 10.1093/oxfordjournals.molbev.a040023.