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(兰科)叶绿体全基因组的特征分析

Characterization of the complete chloroplast genome of (Orchidaceae).

作者信息

Wu Qiu-Ping, Zhai Jun-Wen, Wu Kun-Lin, Fang Lin, Zeng Song-Jun, Li Lin

机构信息

Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, China.

University of Chinese Academy of Sciences, Beijing, China.

出版信息

Mitochondrial DNA B Resour. 2020 Oct 7;5(3):3507-3509. doi: 10.1080/23802359.2020.1827058.

Abstract

has been classified as a national second-class protected orchid species in China. In this study, we report and characterize the complete chloroplast (cp) genome sequence of . in an effort to provide genomic resources useful for promoting its conservation and systematic research. The complete genome is 159,010 bp in length and the overall GC content is 43.3%. The cp genome sequence has a typical quadripartite structure, comprising two inverted repeats (IRA and IRB) regions, which are separated by a small singlecopy (SSC) region and a large singlecopy (LSC) region. Moreover, a total of 135 functional genes were annotated, including 89 protein-coding genes, 38 tRNA genes, and 8 rRNA genes. The phylogenetic analysis recovered a close relationship between and , and both species are placed within the tribe Arethuseae (Orchidaceae).

摘要

在中国已被列为国家二级保护兰科植物物种。在本研究中,我们报道并描述了[具体物种名称]的完整叶绿体(cp)基因组序列,旨在提供有助于促进其保护和系统研究的基因组资源。完整基因组长度为159,010 bp,总体GC含量为43.3%。cp基因组序列具有典型的四分体结构,由两个反向重复(IRA和IRB)区域组成,这两个区域被一个小单拷贝(SSC)区域和一个大单拷贝(LSC)区域隔开。此外,总共注释了135个功能基因,包括89个蛋白质编码基因、38个tRNA基因和8个rRNA基因。系统发育分析表明[具体物种名称]与[另一物种名称]关系密切且这两个物种都属于万代兰族(兰科)。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/22b6/7782987/65f9bb94b94e/TMDN_A_1827058_F0001_B.jpg

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