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基于系统发育分析的(灯笼鱼目,灯笼鱼科)线粒体全基因组

The complete mitochondrial genome of (Myctophiformes, Myctophidae) with phylogenetic consideration.

作者信息

Liang Shuzhang, Song Wei, Ma Chunyan, Zhang Fengying, Jiang Keji, Wang Luming, Ma Lingbo

机构信息

Key Laboratory of Oceanic and Polar Fisheries, Ministry of Agriculture, East China Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Shanghai, China.

College of Fisheries and Life Sciences, Shanghai Ocean University, Shanghai, China.

出版信息

Mitochondrial DNA B Resour. 2018 Feb 1;3(1):151-152. doi: 10.1080/23802359.2017.1383200.

DOI:10.1080/23802359.2017.1383200
PMID:33474102
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7800513/
Abstract

The complete mitochondrial genome of was obtained, which was 18,282 bp in size and including 13 protein-coding genes, 2 ribosomal RNAs, 23 transfer RNAs and 1 control region. The overall nucleotide composition is 27.92% for A, 24.66% for T, 30.90% for C and 16.52% for G. Among 23 tRNA genes, 8 tRNAs were encoded on the L-strand. Further, the phylogenetic tree, which based on complete mtDNA sequences, revealed that the was genetically closest to species and This study could provide a basic data for the studies on evolution for low temperature adaptability, stock evaluation and conservation genetics.

摘要

获得了[物种名称]的完整线粒体基因组,其大小为18282 bp,包括13个蛋白质编码基因、2个核糖体RNA、23个转运RNA和1个控制区。总体核苷酸组成为:A占27.92%,T占24.66%,C占30.90%,G占16.52%。在23个tRNA基因中,有8个tRNA在轻链上编码。此外,基于完整线粒体DNA序列构建的系统发育树表明,[物种名称]在遗传上与[物种名称1]和[物种名称2]最为接近。本研究可为低温适应性进化、种群评估和保护遗传学研究提供基础数据。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9821/7800513/1fd853ff2c5e/TMDN_A_1383200_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9821/7800513/1fd853ff2c5e/TMDN_A_1383200_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9821/7800513/1fd853ff2c5e/TMDN_A_1383200_F0001_B.jpg

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本文引用的文献

1
The complete mitochondrial genome of (Notothenioidei: Channichthyidae) with phylogenetic consideration.带系统发育考量的(南极鱼亚目:鳄冰鱼科)线粒体全基因组
Mitochondrial DNA B Resour. 2016 Feb 1;1(1):52-53. doi: 10.1080/23802359.2015.1137819.
2
Signature of ocean warming in global fisheries catch.海洋变暖在全球渔业捕捞中的特征。
Nature. 2013 May 16;497(7449):365-8. doi: 10.1038/nature12156.
3
MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences.MEGA:一款以生物学家为中心的用于DNA和蛋白质序列进化分析的软件。
Brief Bioinform. 2008 Jul;9(4):299-306. doi: 10.1093/bib/bbn017. Epub 2008 Apr 16.