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(鲤形目:鲤科)的线粒体全基因组及系统发育分析

Complete mitochondrial genome and phylogenetic analysis of (Cypriniformes: Cyprinidae).

作者信息

Li Chunqing, Huang Haitao, Yang Sifan, He Hao, Fu Qingyong, Chen Shanyuan, Xiao Heng

机构信息

School of Life Sciences, Yunnan University, Kunming, China.

National Demonstration Center for Experimental Life Sciences Education (Yunnan University) Yunnan University, Kunming, China.

出版信息

Mitochondrial DNA B Resour. 2018 Feb 15;3(1):243-244. doi: 10.1080/23802359.2018.1438859.

DOI:10.1080/23802359.2018.1438859
PMID:33474131
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7799992/
Abstract

is a freshwater cyprinid fish of high nutritional value, endemic to Shilin County, Southwestern China. In this study, we first sequenced the complete mitochondrial genome (mitogenome) of . The whole length of mitogenome is 16,585 bp, which contains 13 protein-coding genes, two ribosomal RNA genes, 22 transfer RNA genes, and a control region. The gene arrangement and structure is identical to other previously reported fishes. The overall base composition is 31.26% A, 16.42% G, 25.41% T and 26.90% C, with AT content of 56.67%. Phylogenetic analysis using mitogenomes of 13 cyprinid fishes showed that are closely related to , , and , and 11 species are grouped as a monophyletic clade with strong supports.

摘要

是一种具有高营养价值的淡水鲤科鱼类,原产于中国西南部的石林县。在本研究中,我们首次对的完整线粒体基因组(线粒体基因组)进行了测序。线粒体基因组全长16,585 bp,包含13个蛋白质编码基因、两个核糖体RNA基因、22个转运RNA基因和一个控制区。基因排列和结构与其他先前报道的鱼类相同。总体碱基组成为31.26%A、16.42%G、25.41%T和26.90%C,AT含量为56.67%。使用13种鲤科鱼类的线粒体基因组进行的系统发育分析表明,与、和密切相关,并且11个物种被归为一个具有强支持的单系类群。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8c83/7799992/42c5772599ac/TMDN_A_1438859_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8c83/7799992/42c5772599ac/TMDN_A_1438859_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8c83/7799992/42c5772599ac/TMDN_A_1438859_F0001_B.jpg

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本文引用的文献

1
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3
A5-miseq: an updated pipeline to assemble microbial genomes from Illumina MiSeq data.
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Mitochondrial DNA B Resour. 2019 Sep 19;4(2):3094-3095. doi: 10.1080/23802359.2019.1667274.
A5-miseq:一种用于从Illumina MiSeq数据组装微生物基因组的更新流程。
Bioinformatics. 2015 Feb 15;31(4):587-9. doi: 10.1093/bioinformatics/btu661. Epub 2014 Oct 22.
4
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.SPAdes:一种新的基因组组装算法及其在单细胞测序中的应用
J Comput Biol. 2012 May;19(5):455-77. doi: 10.1089/cmb.2012.0021. Epub 2012 Apr 16.
5
The complete mitochondrial genomes of two species from Sinocyclocheilus (Cypriniformes: Cyprinidae) and a phylogenetic analysis within Cyprininae.两种产自 Sinocyclocheilus(鲤形目:鲤科)鱼类的完整线粒体基因组及鲤科鱼类亚科内的系统发育分析。
Mol Biol Rep. 2010 Jun;37(5):2163-71. doi: 10.1007/s11033-009-9689-x. Epub 2009 Aug 18.
6
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models.RAxML-VI-HPC:基于最大似然法的系统发育分析,适用于数千个分类单元及混合模型。
Bioinformatics. 2006 Nov 1;22(21):2688-90. doi: 10.1093/bioinformatics/btl446. Epub 2006 Aug 23.
7
Automatic annotation of organellar genomes with DOGMA.使用DOGMA对细胞器基因组进行自动注释。
Bioinformatics. 2004 Nov 22;20(17):3252-5. doi: 10.1093/bioinformatics/bth352. Epub 2004 Jun 4.
8
MrBayes 3: Bayesian phylogenetic inference under mixed models.MrBayes 3:混合模型下的贝叶斯系统发育推断。
Bioinformatics. 2003 Aug 12;19(12):1572-4. doi: 10.1093/bioinformatics/btg180.
9
tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.tRNAscan-SE:用于改进基因组序列中转运RNA基因检测的程序。
Nucleic Acids Res. 1997 Mar 1;25(5):955-64. doi: 10.1093/nar/25.5.955.