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(鲤形目:鲤科)线粒体全基因组的特征分析及系统发育分析

Characterization and phylogenetic analysis of the complete mitochondrial genome of (Cypriniformes: Cyprinidae).

作者信息

Li Chunqing, Hu Fang, He Junxian, Li Xutong, Yang Hongfu, Li Weixian, Chen Shanyuan, Xiao Heng

机构信息

School of Ecology and Environmental Science, Yunnan University, Kunming, China.

School of Life Sciences, Yunnan University, Kunming, China.

出版信息

Mitochondrial DNA B Resour. 2022 Apr 4;7(3):566-568. doi: 10.1080/23802359.2022.2054383. eCollection 2022.

DOI:10.1080/23802359.2022.2054383
PMID:35402707
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8986193/
Abstract

is a cyprinid fish species endemic to Southwestern China. In this study, we first sequenced and characterized the complete mitochondrial genome (mitogenome) of by next-generation sequencing method. The entire length of mitogenome is 16,595 base pairs (bp), containing 13 protein-coding genes, two ribosomal RNA genes, 22 transfer RNA genes, and a control region. Its gene arrangement pattern was identical to other previously reported fishes. The overall base composition is 31.12% A, 16.63% G, 25.45% T, and 26.80% C, with AT content of 56.57%. Phylogenetic analysis using mitogenome of 26 Cyprinidae fishes showed that are closely related to and . This work would provide molecular information fundamental to future phylogenetic analyses among species.

摘要

是一种中国西南地区特有的鲤科鱼类。在本研究中,我们首先采用下一代测序方法对其完整线粒体基因组(线粒体基因组)进行了测序和特征分析。线粒体基因组全长16,595个碱基对(bp),包含13个蛋白质编码基因、两个核糖体RNA基因、22个转运RNA基因和一个控制区。其基因排列模式与其他先前报道的鱼类相同。总体碱基组成为31.12%的A、16.63%的G、25.45%的T和26.80%的C,AT含量为56.57%。使用26种鲤科鱼类的线粒体基因组进行的系统发育分析表明,与和密切相关。这项工作将为未来该物种间的系统发育分析提供基础分子信息。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d1eb/8986193/8b9836562d6f/TMDN_A_2054383_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d1eb/8986193/8b9836562d6f/TMDN_A_2054383_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d1eb/8986193/8b9836562d6f/TMDN_A_2054383_F0001_B.jpg

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本文引用的文献

1
The complete mitochondrial genome of (Cyprinoidea: Cyprinidae).(鲤形目鲤科)的完整线粒体基因组。
Mitochondrial DNA B Resour. 2021 Feb 15;6(2):540-541. doi: 10.1080/23802359.2020.1756482.
2
Complete mitochondrial genome and phylogenetic analysis of (Cypriniformes: Cyprinidae).(鲤形目:鲤科)的线粒体全基因组及系统发育分析
Mitochondrial DNA B Resour. 2018 Feb 15;3(1):243-244. doi: 10.1080/23802359.2018.1438859.
3
The complete mitochondrial genome sequence of (Cypriniformes: Cyprinidae) and phylogenetic implications.
(鲤形目:鲤科)的线粒体全基因组序列及其系统发育意义
Mitochondrial DNA B Resour. 2017 Sep 9;2(2):638-639. doi: 10.1080/23802359.2017.1375878.
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Characterization and phylogenetic analysis of the complete mitogenome of a rare cavefish, Sinocyclocheilus multipunctatus (Cypriniformes: Cyprinidae).稀有洞穴鱼类多斑金线鲃(鲤形目:鲤科)线粒体全基因组的特征分析及系统发育分析
Genes Genomics. 2018 Oct;40(10):1033-1040. doi: 10.1007/s13258-018-0711-3. Epub 2018 Jun 8.
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