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菊科(菊科植物)的完整叶绿体基因组序列

The complete chloroplast genome sequence of (Asteraceae).

作者信息

Zhou Yubing, Ng Wei Lun, Zhou Renchao, Wu Wei

机构信息

State Key Laboratory of Biocontrol, Guangdong Provincial Key Laboratory of Plant Resources, School of Life Sciences, Sun Yat-Sen University, Guangzhou, China.

出版信息

Mitochondrial DNA B Resour. 2018 Jul 3;3(2):740-741. doi: 10.1080/23802359.2018.1483767.

DOI:10.1080/23802359.2018.1483767
PMID:33474306
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7800886/
Abstract

is one of the world's worst invasive alien species. The paucity of genetic information for this species has made it difficult for studies on the underlying genetic mechanism of its invasiveness. Herein, we report the chloroplast genome assembly of using Illumina whole-genome sequencing data. The chloroplast genome was 151,939 bp in length, with a large single copy (LSC) region of 83,405 bp, a small single copy (SSC) region of 18,448 bp, separated by two inverted repeat (IR) regions of 25,044 bp each. A total of 134 genes were annotated for the chloroplast genome assembly, including 86 protein-encoding genes. Phylogenetic analysis suggested close relationship between and

摘要

是世界上最具危害性的入侵外来物种之一。该物种的遗传信息匮乏,这使得对其入侵性潜在遗传机制的研究变得困难。在此,我们报告了利用Illumina全基因组测序数据对其叶绿体基因组的组装。叶绿体基因组长度为151,939 bp,其中大单拷贝(LSC)区域为83,405 bp,小单拷贝(SSC)区域为18,448 bp,由两个各为25,044 bp的反向重复(IR)区域隔开。叶绿体基因组组装共注释了134个基因,包括86个蛋白质编码基因。系统发育分析表明与之间存在密切关系

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7d70/7800886/e04f3e64c232/TMDN_A_1483767_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7d70/7800886/e04f3e64c232/TMDN_A_1483767_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7d70/7800886/e04f3e64c232/TMDN_A_1483767_F0001_B.jpg

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本文引用的文献

1
NOVOPlasty: de novo assembly of organelle genomes from whole genome data.NOVOPlasty:从头组装细胞器基因组的全基因组数据。
Nucleic Acids Res. 2017 Feb 28;45(4):e18. doi: 10.1093/nar/gkw955.
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RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies.RAxML 版本 8:用于系统发育分析和大型系统发育后分析的工具。
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MAFFT multiple sequence alignment software version 7: improvements in performance and usability.
MAFFT 多序列比对软件版本 7:性能和易用性的改进。
Mol Biol Evol. 2013 Apr;30(4):772-80. doi: 10.1093/molbev/mst010. Epub 2013 Jan 16.
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Automatic annotation of organellar genomes with DOGMA.使用DOGMA对细胞器基因组进行自动注释。
Bioinformatics. 2004 Nov 22;20(17):3252-5. doi: 10.1093/bioinformatics/bth352. Epub 2004 Jun 4.