韩国植物的完整叶绿体基因组序列及种内多样性。
The complete chloroplast genome sequence of Korean and intra-species diversity.
作者信息
Kang Shin-Jae, Park Hyun-Seung, Koo Hyun Jo, Park Jee Young, Lee Dong Young, Kang Kyo Bin, Han Sang Il, Sung Sang Hyun, Yang Tae-Jin
机构信息
Department of Plant Science, Plant Genomics and Breeding Institute, Research Institute of Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul, Republic of Korea.
College of Pharmacy and Research Institute of Pharmaceutical Science, Seoul National University, Seoul, Republic of Korea.
出版信息
Mitochondrial DNA B Resour. 2018 Aug 23;3(2):941-942. doi: 10.1080/23802359.2018.1502637.
is a traditional medicinal plant well known for its anti-inflammatory effect. The complete chloroplast genome sequence of collected from Korea was obtained by assembly using whole genome sequence data. The chloroplast genome is 155,060 bp in length, containing 88,853 bp in a large single copy (LSC), 18,653 bp in a small single copy (SSC) and 23,777 bp in a pair of inverted repeats (IRs). A total of 112 genes including 78 protein-coding genes and 34 structural RNA genes were identified. The sequence comparison of two collected from Korea and China revealed 48 single nucleotide polymorphisms (SNPs) and 45 insertions/deletions (InDels). In addition, phylogenetic analysis represented intraspecific diversity within species collected in Korea and China.
是一种以其抗炎作用而闻名的传统药用植物。利用全基因组序列数据通过组装获得了从韩国采集的该植物的完整叶绿体基因组序列。叶绿体基因组长度为155,060 bp，其中大单拷贝（LSC）为88,853 bp，小单拷贝（SSC）为18,653 bp，一对反向重复序列（IRs）为23,777 bp。共鉴定出112个基因，包括78个蛋白质编码基因和34个结构RNA基因。对从韩国和中国采集的两种该植物进行序列比较，发现了48个单核苷酸多态性（SNP）和45个插入/缺失（InDel）。此外，系统发育分析显示了在韩国和中国采集的该物种内的种内多样性。
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