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瑞香科土沉香属植物(一种重要且濒危的产沉香树种)的完整叶绿体基因组。

The complete chloroplast genome of Lam. (Thymelaeaceae), an important and threatened agarwood-producing tree species.

作者信息

Lee Shiou Yih, Ng Wei Lun, Mohamed Rozi, Terhem Razak

机构信息

Forest Biotechnology Laboratory Department of Forest Management Faculty of Forestry, Universiti Putra Malaysia, Serdang, Selangor, Malaysia.

State Key Laboratory of Biocontrol and Guangdong Provincial Key Laboratory of Plant Resources School of Life Sciences, Sun Yat-sen University, Guangzhou, Guangdong, China.

出版信息

Mitochondrial DNA B Resour. 2018 Oct 29;3(2):1120-1121. doi: 10.1080/23802359.2018.1519382.

DOI:10.1080/23802359.2018.1519382
PMID:33474439
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7799667/
Abstract

Known for its valuable agarwood, Lam. is an evergreen tropical forest tree species endemic to the Indo-malesian region. Indiscriminate damaging and harvesting of the trees in the wild have resulted in it being listed in the CITES Appendix II for controlled trade and in the IUCN Red List as 'Vulnerable (VU)'. In this study, the complete chloroplast genome of was assembled using data from high-throughput Illumina sequencing. The chloroplast genome was 174,832 bp in size, which included two inverted repeat regions of 42,091 bp each, separated by a large single copy region of 87,302 bp and a small single copy region of 3,348 bp. A total of 139 genes were predicted, including 39 tRNA, 8 rRNA, and 92 protein-coding genes. Phylogenetic analysis placed within the family Thymelaeaceae. The chloroplast genome sequence of offers a useful resource for future studies on the taxonomy and conservation of the threatened trees.

摘要

因其珍贵的沉香而闻名,[树种名称(原文未给出具体树种名)]是一种常绿热带森林树种,为印度 - 马来地区特有。对野生树木的肆意破坏和砍伐导致其被列入《濒危野生动植物种国际贸易公约》附录二以进行贸易管制,并被列入世界自然保护联盟红色名录为“易危(VU)”。在本研究中,利用高通量Illumina测序数据组装了[树种名称(原文未给出具体树种名)]的完整叶绿体基因组。叶绿体基因组大小为174,832 bp,包括两个各为42,091 bp的反向重复区域,由一个87,302 bp的大单拷贝区域和一个3,348 bp的小单拷贝区域隔开。共预测到139个基因,包括39个tRNA、8个rRNA和92个蛋白质编码基因。系统发育分析将[树种名称(原文未给出具体树种名)]置于瑞香科内。[树种名称(原文未给出具体树种名)]的叶绿体基因组序列为未来对受威胁的[树种名称(原文未给出具体树种名)]树木的分类学和保护研究提供了有用的资源。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bbd9/7799667/6de3aa0bea5b/TMDN_A_1519382_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bbd9/7799667/6de3aa0bea5b/TMDN_A_1519382_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bbd9/7799667/6de3aa0bea5b/TMDN_A_1519382_F0001_B.jpg

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