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苏丹萨赫勒地带各亚种的分布与遗传多样性

Distribution and Genetic Diversity of Subspecies across the Sahelian Belt in Sudan.

作者信息

Abuelmaali Sara Abdelrahman, Jamaluddin Jamsari Amirul Firdaus, Noaman Kheder, Allam Mushal, Abushama Hind Mohammad, Elnaiem Dia Eldin, Ishak Intan Haslina, Wajidi Mustafa Fadzil Farid, Jaal Zairi, Abu Kassim Nur Faeza

机构信息

School of Biological Sciences, Universiti Sains Malaysia, Penang 11800, Malaysia.

National Public Health Laboratory, Federal Ministry of Health, Khartoum 11115, Sudan.

出版信息

Pathogens. 2021 Jan 17;10(1):78. doi: 10.3390/pathogens10010078.

Abstract

is the most important arboviral disease vector worldwide. In Africa, it exists as two morphologically distinct forms, often referred to as subspecies, and . There is a dearth of information on the distribution and genetic diversity of these two forms in Sudan and other African Sahelian region countries. This study aimed to explore the distribution and genetic diversity of subspecies using morphology and Cytochrome oxidase-1 mitochondrial marker in a large Sahelian zone in Sudan. An extensive cross-sectional survey of in Sudan was performed. Samples collected from eight locations were morphologically identified, subjected to DNA extraction, amplification, sequencing, and analyses. We classified four populations as and the other four as . Out of 140 sequence samples, forty-six distinct haplotypes were characterized. The haplotype and nucleotide diversity of the collected samples were 0.377-0.947 and 0.002-0.01, respectively. Isolation by distance was significantly evident (r = 0.586, = 0.005). The SAMOVA test indicated that all populations are structured in one group, while the clustered into two groups. AMOVA showed 53.53% genetic differences within populations and 39.22% among groups. Phylogenetic relationships indicated two clusters in which the two subspecies were structured. Thus, the haplotype network consisted of three clusters.

摘要

是全球最重要的虫媒病毒病媒介。在非洲,它以两种形态上不同的形式存在,通常被称为亚种,即 和 。在苏丹和其他非洲萨赫勒地区国家,关于这两种形式的分布和遗传多样性的信息匮乏。本研究旨在利用形态学和细胞色素氧化酶-1线粒体标记物,在苏丹的一个大萨赫勒地区探索 亚种的分布和遗传多样性。在苏丹对 进行了广泛的横断面调查。从八个地点采集的样本进行了形态学鉴定,然后进行DNA提取、扩增、测序和分析。我们将四个种群归类为 ,另外四个归类为 。在140个序列样本中,鉴定出46个不同的单倍型。所采集样本的单倍型多样性和核苷酸多样性分别为0.377 - 0.947和0.002 - 0.01。距离隔离现象显著(r = 0.586, = 0.005)。SAMOVA检验表明,所有 种群构成一个组,而 聚为两个组。AMOVA分析显示,种群内遗传差异占53.53%,组间占39.22%。系统发育关系表明存在两个簇,两个亚种在其中构成结构。因此,单倍型网络由三个簇组成。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6dc7/7830107/0438fb0fce21/pathogens-10-00078-g001.jpg

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