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通过微阵列基因表达数据集再分析鉴定特发性肺动脉高压的潜在风险基因和免疫景观。

Identification of Potential Risk Genes and the Immune Landscape of Idiopathic Pulmonary Arterial Hypertension via Microarray Gene Expression Dataset Reanalysis.

机构信息

Department of Cardiology, State Key Laboratory of Cardiovascular Disease, Fuwai Hospital, National Center for Cardiovascular Diseases, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing 100037, China.

Pulmonary Vascular Disease Center, State Key Laboratory of Cardiovascular Disease, Fuwai Hospital, National Center for Cardiovascular Diseases, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing 100037, China.

出版信息

Genes (Basel). 2021 Jan 19;12(1):125. doi: 10.3390/genes12010125.

Abstract

Gene dysfunction and immune cell infiltration play an essential role in the pathogenesis of idiopathic pulmonary arterial hypertension (IPAH). We aimed to investigate the immune landscape and novel differentially expressed genes (DEGs) of IPAH. In addition, potential druggable molecular targets for IPAH were also explored. In this study, the GSE117261 dataset was reanalyzed to explore the immune landscape and hub DEGs of IPAH. Lasso Cox regression analysis and receiver operating characteristic curve analysis were performed to detect the predictive value of IPAH. Additionally, the underlying drug targets for IPAH treatment were determined by drug-gene analysis. IPAH was significantly associated with the transforming growth factor-β (TGF-β) signaling pathway and Wnt signaling pathway as well as energetic metabolism dysfunction. We identified 31 upregulated and 39 downregulated DEGs in IPAH patients. Six hub genes, namely, , , , , , and , were related to IPAH pathogenesis regardless of sex differences. Prediction model analysis showed that the area under the curve values of the hub DEGs except were all above 0.9 for distinguishing IPAH patients. In addition, the relative proportions of 5 subtypes of immune cells, namely, CD T cells, CD memory resting T cells, γ delta T cells, M1 macrophages, and resting mast cells, were significantly upregulated in the IPAH samples, while 6 subtypes of immune cells, namely, CD naive T cells, resting NK cells, monocytes, M0 macrophages, activated mast cells, and neutrophils, were downregulated. Additionally, a total of 17 intersecting drugs targeting 5 genes, , , , , and , were generated as potential druggable molecular targets for IPAH. Our study revealed the underlying correlations between genes and immune cells in IPAH and demonstrated for the first time that , , , , and may be novel genetic targets for IPAH.

摘要

基因功能障碍和免疫细胞浸润在特发性肺动脉高压(IPAH)的发病机制中起着重要作用。我们旨在研究 IPAH 的免疫图谱和新的差异表达基因(DEG)。此外,还探索了 IPAH 的潜在可药物分子靶标。在这项研究中,重新分析了 GSE117261 数据集,以探讨 IPAH 的免疫图谱和关键 DEG。进行了 Lasso Cox 回归分析和接收者操作特征曲线分析,以检测 IPAH 的预测价值。此外,通过药物-基因分析确定了 IPAH 治疗的潜在药物靶标。IPAH 与转化生长因子-β(TGF-β)信号通路和 Wnt 信号通路以及能量代谢功能障碍显著相关。我们在 IPAH 患者中发现了 31 个上调和 39 个下调的 DEG。六个关键基因,即、、、、、和,与 IPAH 发病机制有关,与性别差异无关。预测模型分析表明,除了之外,这些关键 DEG 的曲线下面积值在区分 IPAH 患者时均高于 0.9。此外,IPAH 样本中 5 种免疫细胞亚群(即 CD T 细胞、CD 记忆静止 T 细胞、γδ T 细胞、M1 巨噬细胞和静止肥大细胞)的相对比例显著上调,而 6 种免疫细胞亚群(即 CD 幼稚 T 细胞、静止 NK 细胞、单核细胞、M0 巨噬细胞、活化肥大细胞和中性粒细胞)下调。此外,共生成了针对 5 个基因(、、、、和)的 17 种交叉药物,作为 IPAH 的潜在可药物分子靶标。我们的研究揭示了 IPAH 中基因与免疫细胞之间的潜在相关性,并首次表明、、、、和可能是 IPAH 的新遗传靶标。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5f73/7835985/b5b299d531d0/genes-12-00125-g001.jpg

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